Miyakogusa Predicted Gene

Lj2g3v2572180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2572180.1 Non Characterized Hit- tr|D7TSR3|D7TSR3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.19,0.0000000000002,Double-stranded RNA binding
motif,Double-stranded RNA-binding; dsrm,Double-stranded RNA-binding;
dsR,CUFF.39108.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC...    52   2e-07
Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC...    52   2e-07

>Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC
          | chr3:46001282-45997216 | 20130731
          Length = 662

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 33 FRSQLHIFAQRAKVGGPVYQTVNEGTQHDPRFRSTVSMGGKSYTT 77
          F+SQL  +AQ+A +G PVY+T  EG  H+P FRSTV M    Y +
Sbjct: 19 FKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDS 63


>Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC
          | chr3:46001282-45997216 | 20130731
          Length = 660

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 33 FRSQLHIFAQRAKVGGPVYQTVNEGTQHDPRFRSTVSMGGKSYTT 77
          F+SQL  +AQ+A +G PVY+T  EG  H+P FRSTV M    Y +
Sbjct: 17 FKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDS 61