Miyakogusa Predicted Gene

Lj2g3v2572170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2572170.1 Non Characterized Hit- tr|I1I6P9|I1I6P9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,40.15,0.000000000000002,seg,NULL; no description,Double-stranded
RNA-binding-like; dsRNA-binding domain-like,NULL;
dsrm,Doub,CUFF.39107.1
         (295 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC...   135   5e-32
Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC...   135   5e-32
Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC...   129   5e-30
Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC...    59   8e-09
Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC...    59   8e-09

>Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC |
           chr4:1278710-1274464 | 20130731
          Length = 320

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 26/225 (11%)

Query: 54  HGKVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQE 113
           H K AE+E +R A++ LT+ I DE +S++ E  + CKA++N+YA+KL +Q+PTYN+V+  
Sbjct: 78  HRKAAEQEVSRFALEHLTKKIKDEAYSIMSEAVTFCKAVLNDYASKLRIQLPTYNSVEYI 137

Query: 114 GPLPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILSKLGNSGSETIFFQMIKEKYNA 173
             +P F+C+L  +G++Y G AA+ K DAE LAARA ILS LGNS S  +  Q+IK K   
Sbjct: 138 EVIPYFLCTLDLNGTSYTGVAARRKNDAEELAARAAILSILGNSNSGVLLAQIIKTKAEL 197

Query: 174 IKRNDSQPFYVT--GVSPPPIENPGLSSDKXXXXXXXXXXXXXXXCHELQGPAVSL---- 227
           +     +    T   V   P E+   SS                 C E  GP +S+    
Sbjct: 198 LDSIKPKALQSTCDSVLVLPEESSERSSLLLQLSGAKDKDEIEMACPE-SGPIISISQQP 256

Query: 228 -------------------QPGSTLPINSGLCSKKRRMNEEKANK 253
                              QP   LPI++G+ +K+RR  + KANK
Sbjct: 257 EMQTHEPTPEAAKSSNEPEQPSVALPIDTGVSAKRRRRLKYKANK 301


>Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC |
           chr4:1278710-1274464 | 20130731
          Length = 320

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 26/225 (11%)

Query: 54  HGKVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQE 113
           H K AE+E +R A++ LT+ I DE +S++ E  + CKA++N+YA+KL +Q+PTYN+V+  
Sbjct: 78  HRKAAEQEVSRFALEHLTKKIKDEAYSIMSEAVTFCKAVLNDYASKLRIQLPTYNSVEYI 137

Query: 114 GPLPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILSKLGNSGSETIFFQMIKEKYNA 173
             +P F+C+L  +G++Y G AA+ K DAE LAARA ILS LGNS S  +  Q+IK K   
Sbjct: 138 EVIPYFLCTLDLNGTSYTGVAARRKNDAEELAARAAILSILGNSNSGVLLAQIIKTKAEL 197

Query: 174 IKRNDSQPFYVT--GVSPPPIENPGLSSDKXXXXXXXXXXXXXXXCHELQGPAVSL---- 227
           +     +    T   V   P E+   SS                 C E  GP +S+    
Sbjct: 198 LDSIKPKALQSTCDSVLVLPEESSERSSLLLQLSGAKDKDEIEMACPE-SGPIISISQQP 256

Query: 228 -------------------QPGSTLPINSGLCSKKRRMNEEKANK 253
                              QP   LPI++G+ +K+RR  + KANK
Sbjct: 257 EMQTHEPTPEAAKSSNEPEQPSVALPIDTGVSAKRRRRLKYKANK 301


>Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC |
           chr5:33978474-33982314 | 20130731
          Length = 357

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 91/131 (69%), Gaps = 3/131 (2%)

Query: 54  HGKVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQE 113
           H K AE+E AR A++ LT+ + DE +S++ E  + CK ++NEYA+KL++Q+PTY +V+ +
Sbjct: 78  HRKAAEQEVARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYK 137

Query: 114 GPLPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILSKLGNSGSETIFFQMIKEK--- 170
             +P F+C+L  +G++Y G+AA+ KKDA  LAARA ILS LGNS S  +  Q+IK K   
Sbjct: 138 EVIPYFVCTLDLNGTSYTGDAARRKKDAVELAARAAILSILGNSNSGVLLAQIIKTKAKL 197

Query: 171 YNAIKRNDSQP 181
           +++ K    QP
Sbjct: 198 FDSTKPKALQP 208


>Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC |
           chr3:46001282-45997216 | 20130731
          Length = 662

 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 14/106 (13%)

Query: 56  KVAEEEAARLAVDSLTR------NITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNT 109
           K AE+ AA +A+  L +      +IT   H        LCK ++ EYA K+N  +P Y +
Sbjct: 71  KAAEQSAAEVALMELAKTGEVNQSITQPVHET-----GLCKNLLQEYAQKMNYAMPLYQS 125

Query: 110 VQQEGP---LPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILS 152
            + + P    P++ C++   G  Y+G  AKTK++AE  AAR  +L+
Sbjct: 126 KKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLA 171


>Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC |
           chr3:46001282-45997216 | 20130731
          Length = 660

 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 14/106 (13%)

Query: 56  KVAEEEAARLAVDSLTR------NITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNT 109
           K AE+ AA +A+  L +      +IT   H        LCK ++ EYA K+N  +P Y +
Sbjct: 69  KAAEQSAAEVALMELAKTGEVNQSITQPVHET-----GLCKNLLQEYAQKMNYAMPLYQS 123

Query: 110 VQQEGP---LPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILS 152
            + + P    P++ C++   G  Y+G  AKTK++AE  AAR  +L+
Sbjct: 124 KKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLA 169