Miyakogusa Predicted Gene

Lj2g3v2560100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2560100.1 Non Characterized Hit- tr|I1MBW8|I1MBW8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52458
PE,77.29,0,SUBFAMILY NOT NAMED,NULL; NUCLEOLAR COMPLEX PROTEIN 4,NULL;
seg,NULL; CBF,CCAAT-binding factor,CUFF.39096.1
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g078780.1 | CCAAT-binding factor | HC | chr5:33660870-3367...   634   0.0  
Medtr5g078810.1 | CCAAT-binding factor | LC | chr5:33681048-3368...    98   2e-20

>Medtr5g078780.1 | CCAAT-binding factor | HC |
           chr5:33660870-33670952 | 20130731
          Length = 607

 Score =  634 bits (1634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/439 (72%), Positives = 365/439 (83%), Gaps = 21/439 (4%)

Query: 20  RNGVADIKTLGEQLLSSASHINNLPLLLTFVSPSSPPRDLIESLISLHSFFLSQLPQL-- 77
           ++ + +IKTLG++LLSSASHINNLPLLLTF+SPSSPP  ++ES++SLHSFFL  LPQL  
Sbjct: 18  QHSITEIKTLGQELLSSASHINNLPLLLTFISPSSPPHHILESILSLHSFFLPLLPQLPS 77

Query: 78  -XXXXXXXXXXXXXXQFIYLTWLRSKFDEFLKSLIDVLASPQSDEEVKEPVLDTFMEFIK 136
                          +FIYLTWLRSKFDEFLK LIDVL + +SDE +KE VLDT MEF+K
Sbjct: 78  SAATSSSSSADSDQSEFIYLTWLRSKFDEFLKLLIDVLVADESDETIKEVVLDTLMEFVK 137

Query: 137 VANGGSFHSALYHRLLHSIVHSTSSPAFLVDLLASKYFKYIDVRYFTFISLEKLIRTMEG 196
           VANGG+FHS+LY+R+L SI+HSTS+  FL+DLL SKYFKYIDVRYFTFISLEKL R ++G
Sbjct: 138 VANGGAFHSSLYNRILRSIIHSTSNAEFLIDLLISKYFKYIDVRYFTFISLEKLTRNLDG 197

Query: 197 KDIS-----GAYRTDEDQLSSNMEYVIDNLYYTLSHVPPLEGSDNTSVLEMWSRSESDQK 251
           KD S      A  TDE QLSS+ E++I N+YYT+SH+PPLE SD+TS LEMWS +     
Sbjct: 198 KDASDDKTASADGTDESQLSSSTEFIIHNMYYTISHIPPLEKSDDTSHLEMWSLT----- 252

Query: 252 QLSGDMDEDGKQLNPKKLANNVLSAAKIAKKMKLKFTKAWIAYLRLPLTLDLYKEVLVNL 311
                   D KQL  KK  NNVLSAA+IAKKMKLKFTKAWIAYLRLPL LDL+KEVLVNL
Sbjct: 253 --------DDKQLKSKKRNNNVLSAARIAKKMKLKFTKAWIAYLRLPLPLDLFKEVLVNL 304

Query: 312 HQAVIPHLSNPIMLCDFLTRSYDVGGVVSVMALSSLFVLMTKYGLEYPKFYEKLYALLVP 371
           HQAVIPHLSNPIMLCDFLTRSYDVGGVVSVMAL+SLF+LMT++GLEYPKFYEKLYALLVP
Sbjct: 305 HQAVIPHLSNPIMLCDFLTRSYDVGGVVSVMALNSLFILMTQHGLEYPKFYEKLYALLVP 364

Query: 372 SIFLEKHRARFFELLDSCLKSPLLPAYLAASFTKKLSRLLLSVPPSGALVITALIHNVLR 431
           SIF+ KHRARFF+LLDSCLKSPLLPAYLAASF KKLSRLLLSVPPSGALVIT+L+HN+LR
Sbjct: 365 SIFMAKHRARFFQLLDSCLKSPLLPAYLAASFAKKLSRLLLSVPPSGALVITSLVHNILR 424

Query: 432 RHPSINCLVHREDAVDEGK 450
           RHPSINCLVHRE+  ++ +
Sbjct: 425 RHPSINCLVHREEVNEDSE 443


>Medtr5g078810.1 | CCAAT-binding factor | LC |
           chr5:33681048-33681803 | 20130731
          Length = 79

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 57/70 (81%)

Query: 368 LLVPSIFLEKHRARFFELLDSCLKSPLLPAYLAASFTKKLSRLLLSVPPSGALVITALIH 427
           +L+ S    ++   F +LLD CLKSPLLPAYLAASF KKLSRLLLSVPPSGALVIT+ +H
Sbjct: 1   MLMSSFIFWQYAICFLQLLDFCLKSPLLPAYLAASFAKKLSRLLLSVPPSGALVITSPVH 60

Query: 428 NVLRRHPSIN 437
           N+LRRHPSI 
Sbjct: 61  NILRRHPSIK 70