Miyakogusa Predicted Gene

Lj2g3v2560000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2560000.1 Non Characterized Hit- tr|A5BLU3|A5BLU3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.09,2e-19,seg,NULL; "Winged helix" DNA-binding domain,NULL;
H15,Histone H1/H5; Linker_histone,Histone H1/H5; A,CUFF.39083.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g078330.1 | linker histone H1 and h5 family protein | HC |...   145   2e-35
Medtr3g065570.1 | linker histone H1 and h5 family protein | HC |...   117   4e-27
Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |...    63   1e-10
Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |...    59   2e-09
Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |...    59   3e-09
Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |...    57   1e-08
Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |...    52   3e-07
Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |...    51   5e-07
Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |...    49   2e-06

>Medtr5g078330.1 | linker histone H1 and h5 family protein | HC |
           chr5:33480032-33481579 | 20130731
          Length = 204

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 98/143 (68%), Gaps = 5/143 (3%)

Query: 1   MATEEVNKPSSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHL 60
           MAT+EVNKP SLPPYPEMIM+ALE+LN+PNGSNKS+IS+YIES +GELPE H+ +L  HL
Sbjct: 1   MATQEVNKPLSLPPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHL 60

Query: 61  NQMKESGELVFLNNNYMKPDPNXXXXXXXXXXXXXXXXL--PLDTVVAXXXXXXXXXKDP 118
           NQMK++G+LVF  NNYMKPDPN                L  P   V++         KDP
Sbjct: 61  NQMKDNGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDP 120

Query: 119 NAEPK-PKVVSIASGRPRGRPKK 140
           NA PK PK  S  SGR RGRPKK
Sbjct: 121 NAPPKTPKPAS--SGRGRGRPKK 141


>Medtr3g065570.1 | linker histone H1 and h5 family protein | HC |
           chr3:29633659-29632095 | 20130731
          Length = 184

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 3/143 (2%)

Query: 1   MATEEV-NKPSSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILH 59
           MAT  V NKP S+P Y EMI++A+E LN+ NGSNKS+IS YIES +G LP+ H  LL LH
Sbjct: 1   MATGVVINKPLSIPSYREMILKAIEGLNEENGSNKSSISKYIESTYGGLPQGHKVLLNLH 60

Query: 60  LNQMKESGELVFLNNNYMKPDPNXXXXXXXXXXXXXXXXLPLDTVVAXXXXXXXXXKDPN 119
           L +M++SGELVF  NNY K DPN                     + +         KDPN
Sbjct: 61  LARMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKAKESFSSGAMYSQPKPRGRPPKDPN 120

Query: 120 AEPK-PKVVS-IASGRPRGRPKK 140
             PK P++ + + +GRPRGRP+K
Sbjct: 121 GPPKSPQMKAPVGTGRPRGRPRK 143


>Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |
          chr8:45185546-45188667 | 20130731
          Length = 422

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 13 PPYPEMIMEALESLNKPNGSNKSAISSYIESNHGE-LPETHATLLILHLNQMKESGELVF 71
          PPY EMI +A+E+L + +GS+K AI  YIE  + + LP  H+TLL  HLN +K +G L+ 
Sbjct: 28 PPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPEHSTLLTQHLNHLKSAGLLIM 87

Query: 72 LNNNY 76
             +Y
Sbjct: 88 FKKSY 92


>Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |
           chr6:29989072-29995626 | 20130731
          Length = 553

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 13  PPYPEMIMEALESLNKPNGSNKSAISSYIESNH-GELP--ETHATLLILHLNQMKESGEL 69
           PPY EMI  A+E+L + +GS+K AIS YIE  +  +LP  E+H  LL  HL ++K  G L
Sbjct: 43  PPYAEMIYTAIEALKEKDGSSKRAISKYIEHVYRDQLPNSESHQNLLTHHLKRLKSEGLL 102

Query: 70  VFLNNNYMKP 79
             + N+Y+ P
Sbjct: 103 QMIKNSYIIP 112


>Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |
          chr1:35890649-35889690 | 20130731
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 11 SLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELV 70
          S P Y EMI EA+ SL +  GS++ AI+ +IE  H +L  T   L++LHL +   SG+LV
Sbjct: 22 SHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKLV 81

Query: 71 FLNNNY 76
           + N++
Sbjct: 82 KVKNSF 87


>Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |
           chr1:18841060-18840386 | 20130731
          Length = 197

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query: 5   EVNKPSSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMK 64
           + + P   PPY  MI +A++ LN   GS ++AIS +I   + +LP  HAT+L L L ++ 
Sbjct: 52  DFHTPDDHPPYHWMINKAIKELNDECGSTEAAISEFIRREYEDLPTAHATILQLKLRKLC 111

Query: 65  ESGELVFLNN 74
            +GELV   N
Sbjct: 112 MNGELVCTKN 121


>Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |
           chr4:33010895-33015140 | 20130731
          Length = 548

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 13  PPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVF- 71
           PPY  MI +A+  L    GS + AIS +++  + +LP  H  +L LHL ++ E+GE+V  
Sbjct: 77  PPYALMINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEIVCN 136

Query: 72  LNNNYMKP 79
            N  Y+ P
Sbjct: 137 ENGRYVFP 144


>Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |
           chr7:38619056-38620408 | 20130731
          Length = 306

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 13  PPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVFL 72
           P Y EM+ +A+ +L + NGS++ A++ +IE  H  LP     +L++ + ++  SG+LV +
Sbjct: 63  PTYEEMVTDAIVTLKEKNGSSQYALAKFIEEKHKNLPANFKKILLVQIKKLVASGKLVKV 122

Query: 73  NNNY 76
             +Y
Sbjct: 123 KGSY 126


>Medtr7g106530.1 | linker histone H1 and h5 family protein | LC |
           chr7:43367624-43366923 | 20130731
          Length = 144

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 2   ATEEVNKPSSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHG-ELPETHATLLILHL 60
             + + K  + PPY  MI  A++ L++ +G  + AIS +I   +  +LP  HA++L +HL
Sbjct: 35  CLQRIFKSPTHPPYDSMIKRAMKELDEKSGLTEEAISEFIRRQYDKDLPFDHASILHIHL 94

Query: 61  NQMKESGELVFL-NNNYMKPD 80
            ++  SGEL+   N  Y+  D
Sbjct: 95  QKLCMSGELLCTENEKYVFAD 115