Miyakogusa Predicted Gene

Lj2g3v2558970.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2558970.2 Non Characterized Hit- tr|I1MBV2|I1MBV2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,78.41,0,seg,NULL; Rad4 beta-hairpin domain,Rad4 beta-hairpin
domain 1; Rad4 beta-hairpin domain,Rad4 beta-ha,CUFF.39091.2
         (902 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g078360.1 | DNA repair protein complementing xp-C cells-li...  1350   0.0  

>Medtr5g078360.1 | DNA repair protein complementing xp-C cells-like
           protein | HC | chr5:33507932-33499444 | 20130731
          Length = 914

 Score = 1350 bits (3495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/901 (74%), Positives = 747/901 (82%), Gaps = 10/901 (1%)

Query: 9   DETRSPHRPEETLTEISREAVGKLLRRANKVGSSKKKNKPEVEPEINGSQVSEQILQPQT 68
           DET+S H  E +LTEIS+ AVGKLLRRANK G+SKKK   E EP  NG+QV E I+  +T
Sbjct: 17  DETKSQH-TEGSLTEISKGAVGKLLRRANKGGTSKKKTTVEFEPVQNGTQVVEPIVPQKT 75

Query: 69  SEVGHCGGNSIGNVSAEKKRNHVSLGQGFLDEKEELHDSDWEDGAVAMDDRPVTVELNVT 128
           SEV HC  NSIG  SA++K  HVS+ +G +D+KEEL DSDWEDG VAMDD P+T+ELNVT
Sbjct: 76  SEVEHCSRNSIGKDSADEKCGHVSIDEGCIDKKEELDDSDWEDGTVAMDDHPMTIELNVT 135

Query: 129 PDSAVRKQIRRASAEDKELAELVHKAHLLCLLARGRLIDSACDDPLIXXXXXXXXXXXXX 188
           PDS+V+KQIRRASAEDKELAELVHK HLLCLLARGRLID ACDDPLI             
Sbjct: 136 PDSSVKKQIRRASAEDKELAELVHKVHLLCLLARGRLIDRACDDPLIQASLLSLLPAHLL 195

Query: 189 XXXNVTELTSKALHPLIVWFHDNFHVKNCANEDKSPHFALASALESHEGSPEEIAALAVA 248
              NVT+LTSK+L PLI WFH+NFH KNC N +KSPHFALASALE  EGSPEEIAAL+VA
Sbjct: 196 QLSNVTKLTSKSLCPLISWFHENFHAKNCTNGEKSPHFALASALELREGSPEEIAALSVA 255

Query: 249 LFRALNLTARFVSILDVASIKP------VASGSSKGIFSTSTPMISKLKLDFKSPKKSLS 302
           LFRALNLTARFVSILDV+S+KP      +ASGSSKGIF TSTPM+SK KLDFKSPKKSLS
Sbjct: 256 LFRALNLTARFVSILDVSSLKPGQSFKPMASGSSKGIFGTSTPMVSKQKLDFKSPKKSLS 315

Query: 303 SNEREVVGESSLGRSLKSKKACTTSHMTRSKDPPVAKDLNQSVTNSPTSKAHDNNPESYA 362
             ERE + ESSLG S KSKK    S M +SKDP V ++LN SVTNS TS+A DN  ES+ 
Sbjct: 316 Y-EREKLCESSLGHSRKSKKRTAPSEMDQSKDPSVPENLNHSVTNSQTSEAQDN-LESHI 373

Query: 363 IDKSHKPKRKGDLEYEMQLEMALSATAVECSENKMESGVNAESSNVSCPSKRMKIIKGEE 422
            DKSHK KRKGDLE+EMQ+EMALS TAV CS++K+ SG N +SSN SCP KR+K +  EE
Sbjct: 374 TDKSHKLKRKGDLEFEMQMEMALSVTAVGCSKSKVGSGENTDSSNSSCPLKRIKRVIVEE 433

Query: 423 SSTSPQVISTAVGPMKVGSPLYWAEIHSSQENLTGKWVHIDAVNMIIDGEDKVEAMVAAC 482
           SSTSPQ+ISTAVG MKVGSPLYWAE++ S+ENLTGKWVH+DAVN+IIDGEDKVEAMVAAC
Sbjct: 434 SSTSPQLISTAVGSMKVGSPLYWAEVYCSEENLTGKWVHMDAVNLIIDGEDKVEAMVAAC 493

Query: 483 KTSLRYVVAFAGQGAKDVTRRYCMKWYKIAPQRVNSTWWDSVLAPLRDLESGATEGVVLS 542
           KTSLRYVVAFAG GAKDVTRRYCMKWYKIA QRVNSTWW+SVLAPLR+LESGAT GVV S
Sbjct: 494 KTSLRYVVAFAGHGAKDVTRRYCMKWYKIASQRVNSTWWESVLAPLRNLESGATGGVVHS 553

Query: 543 RTNQIVATEANMMDSSAPSRSSLEDIELETRALTEPLPTNQQAYKSHLLYAIEKWLTKYQ 602
           RTNQI ATEANM DS  P+RSS+ED+ELETRALTEPLPTNQQAYK+H LY IEKWLTKYQ
Sbjct: 554 RTNQISATEANMNDSFVPTRSSIEDVELETRALTEPLPTNQQAYKNHSLYVIEKWLTKYQ 613

Query: 603 VLHPKGPILGFCSGHPVYPRTCVQTVKTKERWLREGLQVKPNEHPVKVLKCSIKPQKVQD 662
           +LHPKGP+LGFCSGHPVYPRTCVQTV TKERWLREGLQVKPNEHP K LK SIKPQKVQD
Sbjct: 614 ILHPKGPVLGFCSGHPVYPRTCVQTVMTKERWLREGLQVKPNEHPAKELKRSIKPQKVQD 673

Query: 663 SEADDNGC-SDSKENIKLYGKWQLEPLILPHAVNGIVPKNERGQVEVWSEKCLPPGTVHL 721
            EADD  C +DSKENIKLYGKWQLEPL LPHAVNGIVPKNERGQV+VWSEKCLPPGTVHL
Sbjct: 674 FEADDYDCTTDSKENIKLYGKWQLEPLNLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHL 733

Query: 722 RLPKAFYVAKRLEIDYAPAMVGFEFRNGRSYPVFDGIVVCAEFKDALLXXXXXXXXXXXX 781
           R   A+ VAKRLEID APAMVGFEF+NGR++PV++GIVVCAEFKD LL            
Sbjct: 734 RFRSAYSVAKRLEIDSAPAMVGFEFKNGRAHPVYNGIVVCAEFKDILLEAFAEEDEREKA 793

Query: 782 XXXXXXXXQALNRWYQLLSSIVTRQRLNNRYNSHLSSEMPSDVQCMNDNVSNATACGSSD 841
                   +AL RWYQLLSSIVTRQRLNNRYN+ L+ E+ +DV C+ND VSNAT  GSSD
Sbjct: 794 EEKKRDETEALRRWYQLLSSIVTRQRLNNRYNNSLTPEVSNDVHCVNDKVSNATIFGSSD 853

Query: 842 ENQNPRHHQVEKCDADFDASLSTPVKDHEHVFLKEYESFDKGTSLLTKRCQCGFSVQVEE 901
           ++Q PRHHQ++KCD D D S+S PVKDHEHVFLKEYESFDK TSLLTKRCQCGFSVQVEE
Sbjct: 854 KSQTPRHHQIDKCDTDLDVSVSIPVKDHEHVFLKEYESFDKETSLLTKRCQCGFSVQVEE 913

Query: 902 L 902
           L
Sbjct: 914 L 914