Miyakogusa Predicted Gene

Lj2g3v2538590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2538590.1 Non Characterized Hit- tr|Q8W5G1|Q8W5G1_ORYSJ
Putative parathymosin OS=Oryza sativa subsp. japonica
,30.26,4e-18,seg,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; no
description,NULL; SWIB,SWIB/MDM2 domain; DEK_C,DEK,
,NODE_33998_length_1421_cov_98.252640.path2.1
         (330 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g055330.2 | SWIB/MDM2 domain protein | HC | chr3:21756054-...   354   8e-98
Medtr3g055330.1 | SWIB/MDM2 domain protein | HC | chr3:21756054-...   353   2e-97
Medtr5g018010.1 | upstream activation factor subunit UAF30, puta...   114   1e-25
Medtr5g018010.3 | upstream activation factor subunit UAF30, puta...   113   2e-25
Medtr5g018010.2 | upstream activation factor subunit UAF30, puta...   113   2e-25
Medtr5g025500.1 | SWIB/MDM2 domain protein | HC | chr5:10358957-...    74   3e-13
Medtr5g005200.1 | SWIB/MDM2 domain protein | HC | chr5:242485-24...    70   3e-12

>Medtr3g055330.2 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752893 | 20130731
          Length = 306

 Score =  354 bits (908), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 189/306 (61%), Positives = 210/306 (68%), Gaps = 29/306 (9%)

Query: 3   VTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLG-HDLSHKLDFIAAQINLLLAX 61
           VTEEEI  A+ SL  E+NPR  TFTTLNQV+ +LQ+ LG +DL+HK+DFI  QINLL A 
Sbjct: 4   VTEEEICSAIHSLFTETNPRTRTFTTLNQVVSELQSKLGGYDLTHKIDFITEQINLLFAA 63

Query: 62  XXXXXXXXXXXXXXXX----------------XXKDHFALHQNPNYPHGPVTSSFQTFSS 105
                                             KDHF LHQNPN    PVTS+F+    
Sbjct: 64  SSQHQQQHVHHHQQQQLQQPPPPQQQPQLISFERKDHFTLHQNPNSHSVPVTSAFRN--- 120

Query: 106 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSTQTKPKRRGGPGGLNKLCGVSPELQVI 165
                                         K+S Q KPKRRGGPGGLNKLCGVSPELQVI
Sbjct: 121 -------NVVVSSAAVADASVAHVSANVLPKESAQPKPKRRGGPGGLNKLCGVSPELQVI 173

Query: 166 VGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCTDMFKMNKLLAKH 225
           VGQPA+PRTEIVKQLWAYI+KNNLQDPSNKRKIICNDEL VVFETDCTDMFKMNKLLAKH
Sbjct: 174 VGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 233

Query: 226 IIALEPSKQPAPKRQKVDVESGTKSAEPA--PSVIISDTLANFFGVTGREMLQSEGLRRL 283
           IIALEP+K+PAPK+QKV+VE GT+SAEPA  PSVIISD+LANFFGVTGREMLQ+E LRR+
Sbjct: 234 IIALEPTKKPAPKKQKVEVEVGTRSAEPAPTPSVIISDSLANFFGVTGREMLQTEVLRRI 293

Query: 284 WGGIKV 289
           W  IKV
Sbjct: 294 WEYIKV 299


>Medtr3g055330.1 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752570 | 20130731
          Length = 344

 Score =  353 bits (905), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/306 (61%), Positives = 210/306 (68%), Gaps = 29/306 (9%)

Query: 3   VTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLG-HDLSHKLDFIAAQINLLLAX 61
           VTEEEI  A+ SL  E+NPR  TFTTLNQV+ +LQ+ LG +DL+HK+DFI  QINLL A 
Sbjct: 4   VTEEEICSAIHSLFTETNPRTRTFTTLNQVVSELQSKLGGYDLTHKIDFITEQINLLFAA 63

Query: 62  XXXXXXXXXXXXXXXX----------------XXKDHFALHQNPNYPHGPVTSSFQTFSS 105
                                             KDHF LHQNPN    PVTS+F+    
Sbjct: 64  SSQHQQQHVHHHQQQQLQQPPPPQQQPQLISFERKDHFTLHQNPNSHSVPVTSAFRN--- 120

Query: 106 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSTQTKPKRRGGPGGLNKLCGVSPELQVI 165
                                         K+S Q KPKRRGGPGGLNKLCGVSPELQVI
Sbjct: 121 -------NVVVSSAAVADASVAHVSANVLPKESAQPKPKRRGGPGGLNKLCGVSPELQVI 173

Query: 166 VGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCTDMFKMNKLLAKH 225
           VGQPA+PRTEIVKQLWAYI+KNNLQDPSNKRKIICNDEL VVFETDCTDMFKMNKLLAKH
Sbjct: 174 VGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKH 233

Query: 226 IIALEPSKQPAPKRQKVDVESGTKSAEPA--PSVIISDTLANFFGVTGREMLQSEGLRRL 283
           IIALEP+K+PAPK+QKV+VE GT+SAEPA  PSVIISD+LANFFGVTGREMLQ+E LRR+
Sbjct: 234 IIALEPTKKPAPKKQKVEVEVGTRSAEPAPTPSVIISDSLANFFGVTGREMLQTEVLRRI 293

Query: 284 WGGIKV 289
           W  IKV
Sbjct: 294 WEYIKV 299


>Medtr5g018010.1 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691091 | 20130731
          Length = 344

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 96/172 (55%), Gaps = 44/172 (25%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ L  +F  D  
Sbjct: 134 KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 193

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 194 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 253

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEGLRRLWGGIK 288
            KRQKV    G+     AP + +SD LA F G +  E+ +S+ ++R+W  IK
Sbjct: 254 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIK 298



 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 4/97 (4%)

Query: 137 DSTQTKPKRR---GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPS 193
           D  + K KR+    G G L  L  +S  L   +G+  L R++++K++W YI+ NNLQDPS
Sbjct: 248 DEPKGKEKRQKVGSGKGFLAPL-QLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPS 306

Query: 194 NKRKIICNDELPVVFETDCTDMFKMNKLLAKHIIALE 230
           +KR+I+C+++L  +F+ D    F + KLLA H I  E
Sbjct: 307 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 343


>Medtr5g018010.3 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 96/172 (55%), Gaps = 44/172 (25%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ L  +F  D  
Sbjct: 57  KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 116

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 117 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 176

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEGLRRLWGGIK 288
            KRQKV    G+     AP + +SD LA F G +  E+ +S+ ++R+W  IK
Sbjct: 177 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIK 221



 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 4/97 (4%)

Query: 137 DSTQTKPKRR---GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPS 193
           D  + K KR+    G G L  L  +S  L   +G+  L R++++K++W YI+ NNLQDPS
Sbjct: 171 DEPKGKEKRQKVGSGKGFLAPL-QLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 194 NKRKIICNDELPVVFETDCTDMFKMNKLLAKHIIALE 230
           +KR+I+C+++L  +F+ D    F + KLLA H I  E
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 266


>Medtr5g018010.2 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 96/172 (55%), Gaps = 44/172 (25%)

Query: 154 KLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCT 213
           K+C +SP+LQ  VG P + RTE+VKQLWAYIR+ +LQDP+N+R IIC++ L  +F  D  
Sbjct: 57  KICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVDTI 116

Query: 214 DMFKMNKLLAKHIIALE----------PSKQPAP-------------------------- 237
           +MF+MNK+LAKHI  L+          P ++PAP                          
Sbjct: 117 NMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDLDEPKGK 176

Query: 238 -KRQKVDVESGTKSAEPAPSVIISDTLANFFGVTGREMLQSEGLRRLWGGIK 288
            KRQKV    G+     AP + +SD LA F G +  E+ +S+ ++R+W  IK
Sbjct: 177 EKRQKV----GSGKGFLAP-LQLSDALAKFLGES--ELSRSDVIKRMWDYIK 221



 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 4/97 (4%)

Query: 137 DSTQTKPKRR---GGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPS 193
           D  + K KR+    G G L  L  +S  L   +G+  L R++++K++W YI+ NNLQDPS
Sbjct: 171 DEPKGKEKRQKVGSGKGFLAPL-QLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPS 229

Query: 194 NKRKIICNDELPVVFETDCTDMFKMNKLLAKHIIALE 230
           +KR+I+C+++L  +F+ D    F + KLLA H I  E
Sbjct: 230 DKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKAE 266


>Medtr5g025500.1 | SWIB/MDM2 domain protein | HC |
           chr5:10358957-10357050 | 20130731
          Length = 134

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFE 209
           GG+ K+  V+ EL   +G P + RTE VK++W YI+  NLQ+P+NK++I C+D+L  +F+
Sbjct: 53  GGIQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFD 112

Query: 210 TDCTDMF-KMNKLLAKHII 227
                +F ++ KLLA H +
Sbjct: 113 GKDKVVFTEIAKLLATHFV 131


>Medtr5g005200.1 | SWIB/MDM2 domain protein | HC |
           chr5:242485-244145 | 20130731
          Length = 143

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 2/92 (2%)

Query: 138 STQTKPKRRGGP-GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKR 196
           +T ++P   GG   G+ K   +SPE+Q +VGQP + RT+ +K +WA+I+++NLQ+P  KR
Sbjct: 51  ATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKR 110

Query: 197 KIICNDELPVVFE-TDCTDMFKMNKLLAKHII 227
            I C+++L  VF   D  DM ++  L++ H +
Sbjct: 111 LIRCDEKLKKVFAGRDEVDMLEIAGLISPHFL 142