Miyakogusa Predicted Gene

Lj2g3v2535450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2535450.1 Non Characterized Hit- tr|C5XC41|C5XC41_SORBI
Putative uncharacterized protein Sb02g024100
OS=Sorghu,47.66,5e-19,seg,NULL,CUFF.39053.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g077280.1 | transmembrane protein, putative | HC | chr5:32...   198   4e-51
Medtr5g091900.1 | transmembrane protein, putative | HC | chr5:40...   169   2e-42
Medtr5g077280.2 | transmembrane protein, putative | HC | chr5:32...   135   4e-32
Medtr5g077270.1 | pentatricopeptide (PPR) repeat protein, putati...    75   4e-14

>Medtr5g077280.1 | transmembrane protein, putative | HC |
           chr5:32998460-32994709 | 20130731
          Length = 202

 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/207 (52%), Positives = 129/207 (62%), Gaps = 5/207 (2%)

Query: 1   MAEKPNGEPVKLHYEKTEKESLYDVVYRLVSEPAYTATQLHRIKTSLSPLLPEASRNSFR 60
           MAEK NG  V +  E   K+ +YDVV  L+ EP  TA   +RIKTSLSP +PEASRN  R
Sbjct: 1   MAEKENG--VTVEQESFNKKKIYDVVQSLILEPCDTA---NRIKTSLSPYIPEASRNYTR 55

Query: 61  RLLLWSRQGSPLRQLLLISIGAVSXXXXXXXXXXXXXXXXXXXXXXIVSLLISXXXXXXX 120
           R+L WSRQGS LR LLLIS+G ++                      IVSL IS       
Sbjct: 56  RVLRWSRQGSSLRPLLLISVGTIALVALTGLLTFMLLLLVATINAIIVSLFISLAVAGGF 115

Query: 121 XXXXXXXXXXIYIGALSVAIFAVSTVVFWSIVAVMITAGWIGFLYTVWFVTRKSMGFAIN 180
                     IYIGALSVAIFA+STVVFW+ VA++ITAGW+GF  T W +  KS+GFA +
Sbjct: 116 LALFFALVTAIYIGALSVAIFAISTVVFWTTVAILITAGWVGFFCTAWLIASKSLGFAKH 175

Query: 181 SLCVTGSAISTYSAAWGTRNLVHKDSD 207
           S  V+GSAIS YSAAWG+RNL HK SD
Sbjct: 176 SFSVSGSAISNYSAAWGSRNLSHKHSD 202


>Medtr5g091900.1 | transmembrane protein, putative | HC |
           chr5:40105123-40108128 | 20130731
          Length = 232

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 8/206 (3%)

Query: 10  VKLHYEKTEKESLYDVVYRLVS-----EPAYTATQLHRIKTSLS---PLLPEASRNSFRR 61
           +K    K  K++L +V+ RL S     +PA   + L RIK S++   PL+PEASRNS   
Sbjct: 27  LKHRNTKPVKQTLPEVLNRLASTILFPDPADGTSLLRRIKNSVADNAPLIPEASRNSAND 86

Query: 62  LLLWSRQGSPLRQLLLISIGAVSXXXXXXXXXXXXXXXXXXXXXXIVSLLISXXXXXXXX 121
           +L+W+R+GSPLR LL+IS+G V+                      ++SLLIS        
Sbjct: 87  VLVWTRRGSPLRALLVISVGTVAFVSLSGLLVFMLFFLTATVNAIVISLLISLAAAGGFL 146

Query: 122 XXXXXXXXXIYIGALSVAIFAVSTVVFWSIVAVMITAGWIGFLYTVWFVTRKSMGFAINS 181
                    IYIGALS+AIF +S   FW+IVA++IT+GWIGF YTVW +TRKS GFA +S
Sbjct: 147 AIFFACATSIYIGALSIAIFVISVTTFWTIVAILITSGWIGFFYTVWLITRKSFGFAKHS 206

Query: 182 LCVTGSAISTYSAAWGTRNLVHKDSD 207
           L VTG+AI+TYS +  +R+LVH DS+
Sbjct: 207 LSVTGAAITTYSTSRASRHLVHTDSN 232


>Medtr5g077280.2 | transmembrane protein, putative | HC |
           chr5:32998460-32994733 | 20130731
          Length = 177

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 1   MAEKPNGEPVKLHYEKTEKESLYDVVYRLVSEPAYTATQLHRIKTSLSPLLPEASRNSFR 60
           MAEK NG  V +  E   K+ +YDVV  L+ EP  TA   +RIKTSLSP +PEASRN  R
Sbjct: 1   MAEKENG--VTVEQESFNKKKIYDVVQSLILEPCDTA---NRIKTSLSPYIPEASRNYTR 55

Query: 61  RLLLWSRQGSPLRQLLLISIGAVSXXXXXXXXXXXXXXXXXXXXXXIVSLLISXXXXXXX 120
           R+L WSRQGS LR LLLIS+G ++                      IVSL IS       
Sbjct: 56  RVLRWSRQGSSLRPLLLISVGTIALVALTGLLTFMLLLLVATINAIIVSLFISLAVAGGF 115

Query: 121 XXXXXXXXXXIYIGALSVAIFAVSTVVFWSIVAVMITAGWIG 162
                     IYIGALSVAIFA+STVVFW+ VA++ITAG +G
Sbjct: 116 LALFFALVTAIYIGALSVAIFAISTVVFWTTVAILITAGNLG 157


>Medtr5g077270.1 | pentatricopeptide (PPR) repeat protein, putative
           | LC | chr5:32993125-32987939 | 20130731
          Length = 872

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 44/72 (61%)

Query: 107 IVSLLISXXXXXXXXXXXXXXXXXIYIGALSVAIFAVSTVVFWSIVAVMITAGWIGFLYT 166
           IVSLLIS                 IYIGAL VA+F ++TV+FW+ VA+ IT GW+ F YT
Sbjct: 782 IVSLLISLAVAGGFLALFFALVTAIYIGALLVALFVITTVMFWTTVAIPITRGWVEFFYT 841

Query: 167 VWFVTRKSMGFA 178
           VW V  KS+ FA
Sbjct: 842 VWLVGTKSLKFA 853