Miyakogusa Predicted Gene

Lj2g3v2506760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2506760.1 Non Characterized Hit- tr|B9HT98|B9HT98_POPTR
Putative uncharacterized protein (Fragment)
OS=Populus,44.44,3e-18,FAMILY NOT NAMED,NULL; seg,NULL;
coiled-coil,NULL,gene.g43427.t1.1
         (697 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g092460.4 | nucleolar gar2-like protein | HC | chr7:366414...   271   2e-72
Medtr7g092460.3 | nucleolar gar2-like protein | HC | chr7:366421...   271   2e-72
Medtr7g092460.1 | nucleolar gar2-like protein | HC | chr7:366421...   271   2e-72
Medtr7g092460.2 | nucleolar gar2-like protein | HC | chr7:366421...   271   2e-72
Medtr1g075790.1 | hypothetical protein | HC | chr1:33586707-3358...   244   2e-64

>Medtr7g092460.4 | nucleolar gar2-like protein | HC |
           chr7:36641467-36636796 | 20130731
          Length = 710

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 24/267 (8%)

Query: 446 LDSKVEHLESKIKMLEGELREAAAIEASLYSVVAEHGSSMGKVHAPARRLSRLYLHACKE 505
           + SK++ +ES+I+ LE ELRE AA+E SLYS+V EHGSS  KVH PARRLSRLY+HACK 
Sbjct: 178 MKSKIKEMESRIENLEEELREVAALEVSLYSIVPEHGSSAHKVHTPARRLSRLYIHACKH 237

Query: 506 NIQARRSGAAKSAISGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDVAPSNPAV- 564
               R++  AK+A+SGL+LVAK+CGNDV RLTFWLSN+IVLR IIS+   +    +P + 
Sbjct: 238 WTPKRKATIAKNAVSGLILVAKSCGNDVSRLTFWLSNTIVLREIISQAFGNSGQVSPIMR 297

Query: 565 -----SSTRRKSGEGNGKIAQSLIWKGYSHKKSENTAIEFGGIGNWDDPNVFTSALEKVE 619
                 S +R  G+     + SL WKG  + KS N  ++ G   +W +   FT ALE+VE
Sbjct: 298 LAGSNGSVKRNDGK-----SASLKWKGIPNGKSGNGFMQTG--EDWQETGTFTLALERVE 350

Query: 620 AWLFSRIVESIWWQSLTPHMQ---------KSYTKMSGTC--DQDLGNLSLDIWKNAFRE 668
           +W+FSR+VES+WWQ+LTP+MQ         KS  ++ G    D + GN S+++W+NAF++
Sbjct: 351 SWIFSRLVESVWWQALTPYMQSSVGDSCSNKSAGRLLGPALGDHNQGNFSINLWRNAFQD 410

Query: 669 ACERICPLRAGRHECGCLSVLPRLFNE 695
           A +R+CPLRAG HECGCL V+ R+  E
Sbjct: 411 AFQRLCPLRAGGHECGCLPVMARMVME 437


>Medtr7g092460.3 | nucleolar gar2-like protein | HC |
           chr7:36642157-36636796 | 20130731
          Length = 710

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 24/267 (8%)

Query: 446 LDSKVEHLESKIKMLEGELREAAAIEASLYSVVAEHGSSMGKVHAPARRLSRLYLHACKE 505
           + SK++ +ES+I+ LE ELRE AA+E SLYS+V EHGSS  KVH PARRLSRLY+HACK 
Sbjct: 178 MKSKIKEMESRIENLEEELREVAALEVSLYSIVPEHGSSAHKVHTPARRLSRLYIHACKH 237

Query: 506 NIQARRSGAAKSAISGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDVAPSNPAV- 564
               R++  AK+A+SGL+LVAK+CGNDV RLTFWLSN+IVLR IIS+   +    +P + 
Sbjct: 238 WTPKRKATIAKNAVSGLILVAKSCGNDVSRLTFWLSNTIVLREIISQAFGNSGQVSPIMR 297

Query: 565 -----SSTRRKSGEGNGKIAQSLIWKGYSHKKSENTAIEFGGIGNWDDPNVFTSALEKVE 619
                 S +R  G+     + SL WKG  + KS N  ++ G   +W +   FT ALE+VE
Sbjct: 298 LAGSNGSVKRNDGK-----SASLKWKGIPNGKSGNGFMQTG--EDWQETGTFTLALERVE 350

Query: 620 AWLFSRIVESIWWQSLTPHMQ---------KSYTKMSGTC--DQDLGNLSLDIWKNAFRE 668
           +W+FSR+VES+WWQ+LTP+MQ         KS  ++ G    D + GN S+++W+NAF++
Sbjct: 351 SWIFSRLVESVWWQALTPYMQSSVGDSCSNKSAGRLLGPALGDHNQGNFSINLWRNAFQD 410

Query: 669 ACERICPLRAGRHECGCLSVLPRLFNE 695
           A +R+CPLRAG HECGCL V+ R+  E
Sbjct: 411 AFQRLCPLRAGGHECGCLPVMARMVME 437


>Medtr7g092460.1 | nucleolar gar2-like protein | HC |
           chr7:36642157-36636796 | 20130731
          Length = 710

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 24/267 (8%)

Query: 446 LDSKVEHLESKIKMLEGELREAAAIEASLYSVVAEHGSSMGKVHAPARRLSRLYLHACKE 505
           + SK++ +ES+I+ LE ELRE AA+E SLYS+V EHGSS  KVH PARRLSRLY+HACK 
Sbjct: 178 MKSKIKEMESRIENLEEELREVAALEVSLYSIVPEHGSSAHKVHTPARRLSRLYIHACKH 237

Query: 506 NIQARRSGAAKSAISGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDVAPSNPAV- 564
               R++  AK+A+SGL+LVAK+CGNDV RLTFWLSN+IVLR IIS+   +    +P + 
Sbjct: 238 WTPKRKATIAKNAVSGLILVAKSCGNDVSRLTFWLSNTIVLREIISQAFGNSGQVSPIMR 297

Query: 565 -----SSTRRKSGEGNGKIAQSLIWKGYSHKKSENTAIEFGGIGNWDDPNVFTSALEKVE 619
                 S +R  G+     + SL WKG  + KS N  ++ G   +W +   FT ALE+VE
Sbjct: 298 LAGSNGSVKRNDGK-----SASLKWKGIPNGKSGNGFMQTG--EDWQETGTFTLALERVE 350

Query: 620 AWLFSRIVESIWWQSLTPHMQ---------KSYTKMSGTC--DQDLGNLSLDIWKNAFRE 668
           +W+FSR+VES+WWQ+LTP+MQ         KS  ++ G    D + GN S+++W+NAF++
Sbjct: 351 SWIFSRLVESVWWQALTPYMQSSVGDSCSNKSAGRLLGPALGDHNQGNFSINLWRNAFQD 410

Query: 669 ACERICPLRAGRHECGCLSVLPRLFNE 695
           A +R+CPLRAG HECGCL V+ R+  E
Sbjct: 411 AFQRLCPLRAGGHECGCLPVMARMVME 437


>Medtr7g092460.2 | nucleolar gar2-like protein | HC |
           chr7:36642157-36636796 | 20130731
          Length = 710

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 24/267 (8%)

Query: 446 LDSKVEHLESKIKMLEGELREAAAIEASLYSVVAEHGSSMGKVHAPARRLSRLYLHACKE 505
           + SK++ +ES+I+ LE ELRE AA+E SLYS+V EHGSS  KVH PARRLSRLY+HACK 
Sbjct: 178 MKSKIKEMESRIENLEEELREVAALEVSLYSIVPEHGSSAHKVHTPARRLSRLYIHACKH 237

Query: 506 NIQARRSGAAKSAISGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDVAPSNPAV- 564
               R++  AK+A+SGL+LVAK+CGNDV RLTFWLSN+IVLR IIS+   +    +P + 
Sbjct: 238 WTPKRKATIAKNAVSGLILVAKSCGNDVSRLTFWLSNTIVLREIISQAFGNSGQVSPIMR 297

Query: 565 -----SSTRRKSGEGNGKIAQSLIWKGYSHKKSENTAIEFGGIGNWDDPNVFTSALEKVE 619
                 S +R  G+     + SL WKG  + KS N  ++ G   +W +   FT ALE+VE
Sbjct: 298 LAGSNGSVKRNDGK-----SASLKWKGIPNGKSGNGFMQTG--EDWQETGTFTLALERVE 350

Query: 620 AWLFSRIVESIWWQSLTPHMQ---------KSYTKMSGTC--DQDLGNLSLDIWKNAFRE 668
           +W+FSR+VES+WWQ+LTP+MQ         KS  ++ G    D + GN S+++W+NAF++
Sbjct: 351 SWIFSRLVESVWWQALTPYMQSSVGDSCSNKSAGRLLGPALGDHNQGNFSINLWRNAFQD 410

Query: 669 ACERICPLRAGRHECGCLSVLPRLFNE 695
           A +R+CPLRAG HECGCL V+ R+  E
Sbjct: 411 AFQRLCPLRAGGHECGCLPVMARMVME 437


>Medtr1g075790.1 | hypothetical protein | HC |
           chr1:33586707-33580151 | 20130731
          Length = 994

 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 163/254 (64%), Gaps = 25/254 (9%)

Query: 452 HLESKIKMLEGELREAAAIEASLYSVVAEHGSSMGKVHAPARRLSRLYLHACKENIQARR 511
            L+++++ L  EL+EAAA+EAS+YSV+AEHGSS  KVHAPARRLSR Y HA K     + 
Sbjct: 504 ELKAEVERLREELKEAAALEASMYSVIAEHGSS-NKVHAPARRLSRFYFHARKAGSPDKI 562

Query: 512 SGAAKSAISGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKDVAPSNPAVSSTRRKS 571
           + AA+S +SG V V+KACGNDVPRLTFW SN I+LR I+SK  +     + A  +  R  
Sbjct: 563 ASAAQSIVSGFVFVSKACGNDVPRLTFWFSNIILLRAIVSKGVEHKDLGDAACINGERYV 622

Query: 572 GEGNGKIAQSLIWKGYSHKKSENTAIEFGGIGNWDDPNVFTSALEKVEAWLFSRIVESIW 631
              NG             ++ ENT   F    NW DP  F  ALEKVEAW+FSRIVES+W
Sbjct: 623 ---NGLTLH--------EQEKENTEEYF---HNWLDPETFLVALEKVEAWIFSRIVESVW 668

Query: 632 WQSLTPHMQ----------KSYTKMSGTCDQDLGNLSLDIWKNAFREACERICPLRAGRH 681
           WQ+LTP+MQ          K+  K     DQD GN S+D+WK AF+++CER+CPLRAG  
Sbjct: 669 WQTLTPYMQSAAAKSSSSRKTNGKRYIIGDQDQGNFSIDLWKRAFKDSCERLCPLRAGGL 728

Query: 682 ECGCLSVLPRLFNE 695
           +CGCL V+ R+  E
Sbjct: 729 DCGCLPVISRMVME 742



 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 4/69 (5%)

Query: 11  FQRNCLEFNLYEPRRDKIVKGQLLATAIVDLADCGILRETLSISAPLNCKRSYRNTDQSF 70
           F++N LEF+LY    D+ VK QLL +A ++ AD GI++E  +IS  LNCK+++R++ Q  
Sbjct: 92  FKKNYLEFHLY----DRTVKNQLLGSATINFADFGIIKEVKAISFQLNCKKTFRSSTQPL 147

Query: 71  LFIKIEPVE 79
           +++ I+P +
Sbjct: 148 MYVSIQPFD 156