Miyakogusa Predicted Gene

Lj2g3v2449260.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2449260.3 Non Characterized Hit- tr|A9PF63|A9PF63_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,47.3,1e-16,seg,NULL; B3 DNA binding domain,B3 DNA binding
domain; DNA-binding pseudobarrel domain,DNA-binding p,CUFF.38981.3
         (322 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g102450.2 | B3 DNA-binding domain protein | HC | chr2:4413...   187   2e-47
Medtr2g102450.1 | B3 DNA-binding domain protein | HC | chr2:4413...   187   2e-47
Medtr2g102450.3 | B3 DNA-binding domain protein | HC | chr2:4413...   186   3e-47
Medtr4g008310.1 | B3 DNA-binding domain protein | LC | chr4:1483...   155   4e-38
Medtr3g101520.3 | B3 domain transcription factor | HC | chr3:467...   124   1e-28
Medtr3g101520.2 | B3 domain transcription factor | HC | chr3:467...   124   1e-28
Medtr3g101520.1 | B3 domain transcription factor | HC | chr3:467...   123   2e-28
Medtr3g101520.4 | B3 domain transcription factor | HC | chr3:467...   123   2e-28
Medtr4g101970.1 | hypothetical protein | LC | chr4:42193981-4219...    73   4e-13
Medtr1g035460.1 | plant-specific B3-DNA-binding domain protein |...    64   3e-10
Medtr1g021380.1 | plant-specific B3-DNA-binding domain protein |...    59   6e-09
Medtr3g098790.1 | plant-specific B3-DNA-binding domain protein |...    56   5e-08
Medtr1g021500.1 | plant-specific B3-DNA-binding domain protein |...    54   2e-07
Medtr1g021500.2 | plant-specific B3-DNA-binding domain protein |...    54   2e-07
Medtr1g021270.1 | B3 DNA-binding domain protein | HC | chr1:6335...    53   4e-07

>Medtr2g102450.2 | B3 DNA-binding domain protein | HC |
           chr2:44138351-44133716 | 20130731
          Length = 410

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 91/101 (90%)

Query: 1   MNLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGK 60
           +NLQ+S P F+KSM+RSHVYSCFWLGLPSRFC EHLPKT Y M+LEDE G EY+AVY+ +
Sbjct: 133 INLQSSNPIFIKSMLRSHVYSCFWLGLPSRFCVEHLPKTDYTMVLEDEKGLEYDAVYLAR 192

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRAF 101
           ++GLSGGWR FAL+HKLDDGDA+VFELVEA+RFK+YI RAF
Sbjct: 193 KTGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAF 233


>Medtr2g102450.1 | B3 DNA-binding domain protein | HC |
           chr2:44138609-44133694 | 20130731
          Length = 410

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 91/101 (90%)

Query: 1   MNLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGK 60
           +NLQ+S P F+KSM+RSHVYSCFWLGLPSRFC EHLPKT Y M+LEDE G EY+AVY+ +
Sbjct: 133 INLQSSNPIFIKSMLRSHVYSCFWLGLPSRFCVEHLPKTDYTMVLEDEKGLEYDAVYLAR 192

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRAF 101
           ++GLSGGWR FAL+HKLDDGDA+VFELVEA+RFK+YI RAF
Sbjct: 193 KTGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAF 233


>Medtr2g102450.3 | B3 DNA-binding domain protein | HC |
           chr2:44138609-44133694 | 20130731
          Length = 356

 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 91/101 (90%)

Query: 1   MNLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGK 60
           +NLQ+S P F+KSM+RSHVYSCFWLGLPSRFC EHLPKT Y M+LEDE G EY+AVY+ +
Sbjct: 79  INLQSSNPIFIKSMLRSHVYSCFWLGLPSRFCVEHLPKTDYTMVLEDEKGLEYDAVYLAR 138

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRAF 101
           ++GLSGGWR FAL+HKLDDGDA+VFELVEA+RFK+YI RAF
Sbjct: 139 KTGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAF 179


>Medtr4g008310.1 | B3 DNA-binding domain protein | LC |
           chr4:1483273-1486185 | 20130731
          Length = 323

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 82/97 (84%)

Query: 1   MNLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGK 60
           +NLQ+S PS +KSMV SHVY  FWLGLP RFCEEHL K  Y M+LEDE GSE++AVY+ K
Sbjct: 208 INLQSSNPSLIKSMVWSHVYRGFWLGLPRRFCEEHLQKVDYKMVLEDEKGSEHDAVYLRK 267

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYI 97
           ++ LSGGWR FAL HKLDDGDA+VFELVEA+RFK+++
Sbjct: 268 KTALSGGWRTFALKHKLDDGDAVVFELVEAARFKLFL 304


>Medtr3g101520.3 | B3 domain transcription factor | HC |
           chr3:46725903-46730052 | 20130731
          Length = 223

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           +L + +P+FVKSM++SHV   FWLGLP+ FC ++LPK    M L DEDG E    Y+  +
Sbjct: 118 DLDSDHPTFVKSMLQSHVTGGFWLGLPNHFCRKNLPKRDEVMTLIDEDGDESPTTYLAHK 177

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           +GLS GWR FA+ H L DGDAL+FELV+ + FK+YI R 
Sbjct: 178 TGLSAGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRV 216


>Medtr3g101520.2 | B3 domain transcription factor | HC |
           chr3:46725903-46730052 | 20130731
          Length = 223

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           +L + +P+FVKSM++SHV   FWLGLP+ FC ++LPK    M L DEDG E    Y+  +
Sbjct: 118 DLDSDHPTFVKSMLQSHVTGGFWLGLPNHFCRKNLPKRDEVMTLIDEDGDESPTTYLAHK 177

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           +GLS GWR FA+ H L DGDAL+FELV+ + FK+YI R 
Sbjct: 178 TGLSAGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRV 216


>Medtr3g101520.1 | B3 domain transcription factor | HC |
           chr3:46725903-46730052 | 20130731
          Length = 231

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           +L + +P+FVKSM++SHV   FWLGLP+ FC ++LPK    M L DEDG E    Y+  +
Sbjct: 126 DLDSDHPTFVKSMLQSHVTGGFWLGLPNHFCRKNLPKRDEVMTLIDEDGDESPTTYLAHK 185

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           +GLS GWR FA+ H L DGDAL+FELV+ + FK+YI R 
Sbjct: 186 TGLSAGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRV 224


>Medtr3g101520.4 | B3 domain transcription factor | HC |
           chr3:46725903-46730052 | 20130731
          Length = 231

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           +L + +P+FVKSM++SHV   FWLGLP+ FC ++LPK    M L DEDG E    Y+  +
Sbjct: 126 DLDSDHPTFVKSMLQSHVTGGFWLGLPNHFCRKNLPKRDEVMTLIDEDGDESPTTYLAHK 185

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           +GLS GWR FA+ H L DGDAL+FELV+ + FK+YI R 
Sbjct: 186 TGLSAGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRV 224


>Medtr4g101970.1 | hypothetical protein | LC |
          chr4:42193981-42195992 | 20130731
          Length = 372

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)

Query: 50 GSEYEAVYIGKRSGLSGGWRAFALDHKLDDGDALVFELVEASRF 93
          G  + AV+ G RSGLSG WR FAL+HKLDDGDALVFELVEA+RF
Sbjct: 51 GLMFIAVF-GCRSGLSGSWRGFALEHKLDDGDALVFELVEATRF 93


>Medtr1g035460.1 | plant-specific B3-DNA-binding domain protein | LC
           | chr1:12873695-12875594 | 20130731
          Length = 396

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           + +++ PSF  +M  SH+YS   L +PS+F   H+ K   D++L+  DG  ++A Y   +
Sbjct: 191 SFKSNNPSFRITMKSSHIYSHS-LYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYCSAK 249

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEAS--RFKIYICR 99
             ++GGW+ FA+ +KL  GD  +FEL ++     K+ I R
Sbjct: 250 --INGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIFR 287


>Medtr1g021380.1 | plant-specific B3-DNA-binding domain protein | LC
           | chr1:6390073-6392547 | 20130731
          Length = 350

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 3   LQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYE--AVYIGK 60
             +S+P FV  M   ++     L +P  F   HLP    ++ L +  G  +   ++ +G 
Sbjct: 232 FTSSFPYFVMIMKSCNISGSRTLRIPCHFSATHLPDCKTEVTLRNARGECWNVNSIPVGA 291

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYI 97
                GGW AF  D+ ++ GD ++FELV     K+YI
Sbjct: 292 THTFCGGWMAFVRDNGINLGDTIIFELVSNFVMKVYI 328


>Medtr3g098790.1 | plant-specific B3-DNA-binding domain protein | LC
           | chr3:45269198-45271140 | 20130731
          Length = 328

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 3   LQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEH--LPKTLYDMILEDEDGSEYEAVY--- 57
            +T  PSFV  M  S+V   F L +PS F + H  L K   D+  +  +G  + A Y   
Sbjct: 193 FKTCNPSFVVVMGASYVEHHFLLTIPSMFGKRHFDLNKKRGDIHFQLSNGRVWPAKYRIR 252

Query: 58  ---IGKRSGLSGGWRAFALDHKLDDGDALVFELVEASR--FKIYICR 99
               G R  LS GW+ FA D+ L  GDA  FEL+ ++   F+++I R
Sbjct: 253 MSHTGLRFELSSGWKTFAKDNNLKVGDACNFELILSTNMTFQVHIFR 299


>Medtr1g021500.1 | plant-specific B3-DNA-binding domain protein | HC
           | chr1:6438573-6443179 | 20130731
          Length = 491

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 12/99 (12%)

Query: 9   SFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMIL---EDEDGSEYEAVYIGKRSGLS 65
           S + +M  SHVY  F++  P+++   HL  +  D+IL   ++E   +Y    I    GL+
Sbjct: 295 SLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLT 354

Query: 66  GGWRAFALDHKLDDGDALVFE---------LVEASRFKI 95
           GGW+ FALD+ L++ D  +F+         ++E S F++
Sbjct: 355 GGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRV 393


>Medtr1g021500.2 | plant-specific B3-DNA-binding domain protein | HC
           | chr1:6438573-6442047 | 20130731
          Length = 439

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 12/99 (12%)

Query: 9   SFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMIL---EDEDGSEYEAVYIGKRSGLS 65
           S + +M  SHVY  F++  P+++   HL  +  D+IL   ++E   +Y    I    GL+
Sbjct: 295 SLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLT 354

Query: 66  GGWRAFALDHKLDDGDALVFE---------LVEASRFKI 95
           GGW+ FALD+ L++ D  +F+         ++E S F++
Sbjct: 355 GGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRV 393


>Medtr1g021270.1 | B3 DNA-binding domain protein | HC |
           chr1:6335039-6339850 | 20130731
          Length = 596

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 7   YPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKRSG--- 63
           +P+FVK M + +V   + L +P +F   HLP    ++ L +  G  +    +    G   
Sbjct: 481 FPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGQCWIVNSVPDAKGRTI 540

Query: 64  --LSGGWRAFALDHKLDDGDALVFELVEASRFKIYI 97
               GGW AF  D+ ++ GD  +FELV     +++I
Sbjct: 541 HTFCGGWIAFVRDNDINFGDTCIFELVSHYVMQVHI 576