Miyakogusa Predicted Gene

Lj2g3v2437090.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2437090.2 tr|B9INL9|B9INL9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_780816 PE=4
SV=1,37.38,1e-18,seg,NULL,CUFF.38967.2
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g075400.1 | hypothetical protein | HC | chr5:32055351-3205...   120   9e-28
Medtr3g467150.1 | hypothetical protein | HC | chr3:27680826-2767...    82   3e-16

>Medtr5g075400.1 | hypothetical protein | HC |
           chr5:32055351-32052824 | 20130731
          Length = 314

 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 97/202 (48%), Gaps = 40/202 (19%)

Query: 9   LQEKPMLIDLETLYRGIPDESVNLTFQDLANVKSEE--------------------RTXX 48
           + EKPML  LETLY GIPDESVNLTFQDLA+V + E                    RT  
Sbjct: 1   MDEKPMLA-LETLYLGIPDESVNLTFQDLADVNTSENRKQATTNQPVSEVSNNVPIRTNL 59

Query: 49  XXXXXXXXXXXXDFSRGLEATSQNXXXXXXXXDFSGHRGKHHHN---------------- 92
                       DFS+GL+A++Q+          +   G+  H                 
Sbjct: 60  SPSSSLAKIPSLDFSKGLQASNQHNHHHHDIGQGNSPWGQFGHRIEENREHVHVHVHVHD 119

Query: 93  -PPFNHASGRAQNPRPRIEGGDHSGYSMSYDDMSVAXXXXXXXXXXXXXX--IPHSKICT 149
            P F+HA+G  ++PR R  G DHS YS+SYDD+S A                IPHSKICT
Sbjct: 120 PPQFSHANGSTKSPRSRTGGDDHSAYSLSYDDVSTASGRGGGGGSGGRRRPGIPHSKICT 179

Query: 150 ICSSYAYVFRTRCLGLLLAVCA 171
           ICS+Y Y+FRTRCL      C+
Sbjct: 180 ICSTYVYIFRTRCLVCGRVYCS 201


>Medtr3g467150.1 | hypothetical protein | HC |
           chr3:27680826-27678809 | 20130731
          Length = 272

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 1   MGDHKNMTLQEKPMLIDLETLYRGIPDESVNLTFQDLANVKSEERTXXXXXXXXXXXXXX 60
           MGDHK  T++EKP    LE LY+GIPDESVNLTFQDL N                     
Sbjct: 1   MGDHKKKTMEEKP---KLEELYQGIPDESVNLTFQDLPNWNRNITISEGSAINTP----- 52

Query: 61  DFSRGLEATSQNXXXXXXXXDFSGHRGKHHHNPPFNHASGRAQNPRPRIEGGDHSGYSMS 120
             +R + + S +        D      K + N  +N  + R +    +      S +SM 
Sbjct: 53  --TRNIPSPSLSPMSMSPTHDEFKKGFKVYSNHKYNQQNFRHRGVGVQSTPSKASEHSMG 110

Query: 121 YDDMS--VAXXXXXXXXXXXXXXIPHSKICTICSSYAYVFRTRCL 163
           YD MS                  IPHSKICTIC+ Y Y FRTRCL
Sbjct: 111 YDAMSGESLASGKGGAIRRRRQGIPHSKICTICNDYVYFFRTRCL 155