Miyakogusa Predicted Gene

Lj2g3v2376980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2376980.1 Non Characterized Hit- tr|Q1S5K7|Q1S5K7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,61.7,0.00000001,
,gene.Ljchr2_pseudomol_20120830.path1.gene6370.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 | 20...    60   4e-10
Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC...    55   2e-08
Medtr7g056567.1 | hypothetical protein | LC | chr7:20137782-2013...    54   3e-08
Medtr7g067040.1 | hypothetical protein | LC | chr7:24507341-2450...    53   6e-08
Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative...    46   9e-06

>Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 |
           20130731
          Length = 309

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 47  KKVQAGLLKLLPLSSNDHVEDLFTKPLFPRHFNTFFSKLGMVDSFHP 93
           +K+QAG+LKLLP+SS D + D FTK + P+ FN   SKLG+VD +HP
Sbjct: 245 EKLQAGILKLLPVSSKDRIADFFTKFVHPQLFNLLLSKLGIVDIYHP 291


>Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC |
           chr6:20849668-20848461 | 20130731
          Length = 195

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 48  KVQAGLLKLLPLSSNDHVEDLFTKPLFPRHFNTFFSKLGMVDSFHPAA 95
           K+QAG++K L +SS D + D+FT PL P+ F+T  S LGM++S+H  A
Sbjct: 78  KLQAGIIKFLLVSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHSPA 125


>Medtr7g056567.1 | hypothetical protein | LC |
           chr7:20137782-20139042 | 20130731
          Length = 163

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 34/45 (75%)

Query: 47  KKVQAGLLKLLPLSSNDHVEDLFTKPLFPRHFNTFFSKLGMVDSF 91
           +K+Q+G+LKLLP+SS+D + D FT  L P+ F+   SKLG++D +
Sbjct: 92  EKLQSGILKLLPVSSHDQIVDFFTNSLLPKSFSLLLSKLGLIDIY 136


>Medtr7g067040.1 | hypothetical protein | LC |
          chr7:24507341-24508651 | 20130731
          Length = 93

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 33 VTGPQSLRRSTRLGKKVQAGLLKLLPLSSNDHVEDLFTKPLFPRHFNTFFSKLGMV 88
          V+G  S     R  +K+QA +LKLLP+SS D V D FTK L P+ F+   SKLGM+
Sbjct: 23 VSGHASYCYIAR--EKLQANILKLLPVSSKDQVVDFFTKALLPQSFSNLLSKLGMI 76


>Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative |
           LC | chr2:4240748-4238986 | 20130731
          Length = 201

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 48  KVQAGLLKLLPLSSNDHVEDLFTKPLFPRHFNTFFSKLGMV 88
           KVQAGL+ LLP+SS + V D+FT+PL    FNT   KLG +
Sbjct: 149 KVQAGLIHLLPVSSKEQVADIFTRPLHHGPFNTLQIKLGTI 189