Miyakogusa Predicted Gene
- Lj2g3v2365910.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2365910.1 Non Characterized Hit- tr|Q2QXX8|Q2QXX8_ORYSJ
Retrotransposon protein, putative, unclassified
OS=Ory,43.4,0.000000000000001,PREDICTED PROTEIN (FRAGMENT),NULL;
GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.Ljchr2_pseudomol_20120830.path1.gene6366.1
(170 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g056567.1 | hypothetical protein | LC | chr7:20137782-2013... 67 8e-12
Medtr3g448730.1 | hypothetical protein | LC | chr3:16385365-1638... 65 3e-11
Medtr3g093120.1 | SPFH domain/band 7 family protein | LC | chr3:... 65 4e-11
Medtr6g034995.1 | hypothetical protein | LC | chr6:12310735-1230... 59 2e-09
Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC... 59 3e-09
Medtr8g059225.1 | Ty1/Copia-like polyprotein/retrotransposon, pu... 55 2e-08
Medtr5g094070.1 | hypothetical protein | LC | chr5:41092018-4109... 54 5e-08
Medtr4g079363.1 | hypothetical protein | HC | chr4:30665843-3066... 53 1e-07
Medtr6g075400.1 | hypothetical protein | LC | chr6:28003835-2800... 51 5e-07
Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 | 20... 50 1e-06
Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative... 50 1e-06
Medtr4g130710.1 | Ty1/Copia-like polyprotein/retrotransposon, pu... 49 2e-06
Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC | chr7:... 49 3e-06
Medtr4g007210.1 | ubiquitin-conjugating enzyme | LC | chr4:10040... 48 4e-06
>Medtr7g056567.1 | hypothetical protein | LC |
chr7:20137782-20139042 | 20130731
Length = 163
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 55 NWVRSCQSLAFLTSKHQQFLDLQQRPKYWALARVRSELLWLHRLFHAFGEGIASV-IVYS 113
N + C L LTSK + +Y ALA EL W+ L + ++Y
Sbjct: 3 NCKKMCICLYLLTSKLTNSIRSSPEAEYRALASATCELQWIIYLLQDLHIPCPKLPVLYC 62
Query: 114 DNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLRLLHVQSQFQLADLLTKPL 169
DN SA+ + SN HER KH++ID H + E + S L+LL V S Q+ D T L
Sbjct: 63 DNRSALHIVSNSVFHERPKHLEIDYHIVREKLQSGILKLLPVSSHDQIVDFFTNSL 118
>Medtr3g448730.1 | hypothetical protein | LC |
chr3:16385365-16387028 | 20130731
Length = 227
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 81 KYWALARVRSELLWLHRLFHAFGEGIASVIVYSDNVSAIALASNPTSHERSKHVDIDVHF 140
+Y + A ++LLW+ + S+ ++ DN +AI L+ NP H R+KH++I HF
Sbjct: 120 EYISAASCCTQLLWMKHQLEDYQINANSIPIFCDNTAAICLSKNPILHSRAKHIEIKHHF 179
Query: 141 IGEHMASSFLRLLHVQSQFQLADLLTKPL 169
I +++ L + + ++ Q AD+ TKPL
Sbjct: 180 IRDYVQKGILDIQFIDTEHQWADIFTKPL 208
>Medtr3g093120.1 | SPFH domain/band 7 family protein | LC |
chr3:42570339-42574091 | 20130731
Length = 534
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 34 CVEDSLAVPQFLGQISHMRFTNWVRSCQS-LAFLTSKHQQFLDLQQRPKYWALARVRSEL 92
C D A P I+ T WV S +++ T K Q +Y ++A EL
Sbjct: 381 CDADWAACP-----ITRRSLTGWVILGNSPISWKTKKQQVVSRSSAESEYRSMANTTCEL 435
Query: 93 LWLHRLFHAFGEGIASVI-VYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLR 151
W+ + + G + + +Y D+ SA+ +A NP HER+KH+++D HF+ + L+
Sbjct: 436 KWVKSILCSLGISHSMPMQLYCDSQSALHIAKNPVFHERTKHIELDCHFVRNEILHGQLQ 495
Query: 152 LLHVQSQFQLADLLTKPL 169
+V + QLAD+LTK L
Sbjct: 496 PSYVSTHAQLADILTKAL 513
>Medtr6g034995.1 | hypothetical protein | LC |
chr6:12310735-12309973 | 20130731
Length = 152
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 42/60 (70%)
Query: 111 VYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLRLLHVQSQFQLADLLTKPLP 170
Y DNVS + L+ N H+ +KH+++++HF+ + +A +R+ HV S++Q++D+ TK LP
Sbjct: 69 TYYDNVSVVYLSENLIQHKCTKHIEMEIHFVCDKVAKGQVRVFHVSSRYQISDIFTKGLP 128
>Medtr6g060522.1 | Pol polyprotein/retrotransposon, putative | LC |
chr6:20849668-20848461 | 20130731
Length = 195
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 81 KYWALARVRSELLWLHRLFHAFGEGIASV-IVYSDNVSAIALASNPTSHERSKHVDIDVH 139
+Y AL+ EL WL L + + ++Y DN SA+ + +NP HE +KH++I H
Sbjct: 14 EYRALSAATYELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICH 73
Query: 140 FIGEHMASSFLRLLHVQSQFQLADLLTKPL 169
+ + + + ++ L V S+ QLAD+ T PL
Sbjct: 74 LVRDKLQAGIIKFLLVSSKDQLADIFTNPL 103
>Medtr8g059225.1 | Ty1/Copia-like polyprotein/retrotransposon,
putative | LC | chr8:20750378-20750981 | 20130731
Length = 175
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 81 KYWALARVRSELLWLHRLFHAFGEGIASVIVYSDNVSAIALASNPTSHERSKHVDIDVHF 140
+Y + A S++LW+ F ++ V+ DN +AI L+ NP H RSKH++I HF
Sbjct: 108 EYVSAANCCSQVLWIKNQLEDFSIRYTNIPVFCDNTNAINLSKNPIQHSRSKHIEIKHHF 167
Query: 141 IGEHM 145
I +H+
Sbjct: 168 IRDHV 172
>Medtr5g094070.1 | hypothetical protein | LC |
chr5:41092018-41091601 | 20130731
Length = 118
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 106 IASVIVYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLRLLH 154
+ S IV+ D+ S I LA+ P ER KH+D D FI E++ SSFL+L+H
Sbjct: 60 VGSSIVFCDSQSGIQLATKPICQERYKHIDFDCDFIREYVCSSFLKLVH 108
>Medtr4g079363.1 | hypothetical protein | HC |
chr4:30665843-30666627 | 20130731
Length = 213
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 92 LLWLHRLFHAFGEG-IASVIVYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFL 150
+LWL +L G + ++ + DN + + +ASNP HER+KH++ID HF+ + + S +
Sbjct: 105 VLWLRQLLQHLKLGDVKAMNLICDNQATLHIASNPVFHERTKHIEIDCHFVRDKVLSEEI 164
Query: 151 RLLHVQSQFQLADL 164
+ V S QLAD+
Sbjct: 165 IIDLVGSNDQLADI 178
>Medtr6g075400.1 | hypothetical protein | LC |
chr6:28003835-28006556 | 20130731
Length = 203
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 111 VYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLRLLHVQSQFQLADLLTKPL 169
V+ DN SAI L+ N RSKH+D+ HF+ + + +++ +++ Q AD++TKP+
Sbjct: 121 VFCDNASAIKLSKNYVLQGRSKHIDVRFHFVRDLCKDGVIDVIYCKNEEQTADIITKPV 179
>Medtr2g075320.1 | LCR related | HC | chr2:31485484-31482331 |
20130731
Length = 309
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 79 RPKYWALARVRSELLWLHRLFHAFGEGIASVIVYSDNVSAIALASNPTSHERSKHVDIDV 138
+ KY AL EL WL L ++NP HER+KH++ID
Sbjct: 197 KAKYRALGSTFCELQWLLYLLKDLQ----------------VTSANPVFHERTKHLEIDC 240
Query: 139 HFIGEHMASSFLRLLHVQSQFQLADLLTK 167
H + E + + L+LL V S+ ++AD TK
Sbjct: 241 HIVREKLQAGILKLLPVSSKDRIADFFTK 269
>Medtr2g014690.1 | Pol-like polyprotein/retrotransposon, putative |
LC | chr2:4240748-4238986 | 20130731
Length = 201
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 123 SNPTSHERSKHVDIDVHFIGEHMASSFLRLLHVQSQFQLADLLTKPL 169
+NP HER+KH++ID H + + + + + LL V S+ Q+AD+ T+PL
Sbjct: 128 ANPVFHERTKHIEIDCHVVRDKVQAGLIHLLPVSSKEQVADIFTRPL 174
>Medtr4g130710.1 | Ty1/Copia-like polyprotein/retrotransposon,
putative | LC | chr4:54464701-54466588 | 20130731
Length = 161
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 91 ELLWLHRLFHAFGEGIA---SVIVYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMAS 147
E WL L + FG ++ S +Y DNV+ I L++NP H +++I HF+
Sbjct: 77 EPCWLKNLLY-FGASLSYHKSCFIYWDNVNVIYLSNNPVQHRHITYIEICNHFV----RG 131
Query: 148 SFLRLLHVQSQFQLADLLTKPL 169
+R+L+V S+ Q+ D+LTK L
Sbjct: 132 KVVRVLYVPSRCQIIDILTKGL 153
>Medtr7g056447.1 | F-box/RNI/FBD-like domain protein | LC |
chr7:20001294-20000413 | 20130731
Length = 293
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 109 VIVYSDNVSAIALASNPTSHERSKHVDIDVHFIGEHMASSFLRLLHVQSQFQLADLLTKP 168
V ++ D+ SAI LA++ HER+KH+DI +HF+ + + S + + V S+ AD+ TK
Sbjct: 216 VRIHCDSQSAIHLANHQVYHERTKHIDIRLHFVRDMIESKEIVVEKVASEENPADVFTKS 275
Query: 169 LP 170
LP
Sbjct: 276 LP 277
>Medtr4g007210.1 | ubiquitin-conjugating enzyme | LC |
chr4:1004020-1007450 | 20130731
Length = 394
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 93 LWLHRLFHAFGEGIASVI-VYSDNVSAIALASNPTSHERSKHVDIDVHFI 141
+WL R+ H E + V +Y DN S+I L+ NP H R KH+D+ H++
Sbjct: 340 IWLRRILHHLNEELKEVTTIYCDNSSSIKLSKNPIMHGRYKHIDVRFHYL 389