Miyakogusa Predicted Gene

Lj2g3v2351520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2351520.1 Non Characterized Hit- tr|I1N138|I1N138_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42810
PE,67.11,0,MA3,Initiation factor eIF-4 gamma, MA3; Domain in DAP-5,
eIF4G, MA-3 and other prote,Initiation fact,CUFF.38869.1
         (290 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g434840.1 | pre-mRNA-splicing factor cwc22, putative | HC ...   361   e-100
Medtr7g093510.1 | pre-mRNA-splicing factor CWC22-like protein | ...   317   7e-87
Medtr7g093340.1 | pre-mRNA-splicing factor CWC22-like protein | ...   245   3e-65
Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein...    79   5e-15
Medtr7g086290.2 | nucleolar MIF4G domain protein | HC | chr7:334...    72   7e-13
Medtr7g086290.3 | nucleolar MIF4G domain protein | HC | chr7:334...    72   7e-13
Medtr7g086290.4 | nucleolar MIF4G domain protein | HC | chr7:334...    72   8e-13
Medtr7g086290.1 | nucleolar MIF4G domain protein | HC | chr7:334...    72   8e-13
Medtr5g096330.1 | hypothetical protein | LC | chr5:42122120-4212...    50   3e-06

>Medtr3g434840.1 | pre-mRNA-splicing factor cwc22, putative | HC |
           chr3:11335847-11342445 | 20130731
          Length = 766

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/296 (66%), Positives = 220/296 (74%), Gaps = 50/296 (16%)

Query: 6   QFLIEGLFAIRKAKFQGYPAVQSELDVVDIDPEISLDVFKADPNYLENEKRYQELKNSIL 65
           QFLIEGLFAIRKAKFQGYPAV+ ELD+V+ + +++ +V       L+ E           
Sbjct: 404 QFLIEGLFAIRKAKFQGYPAVRPELDLVEQEDQLTHEV------SLDEE----------- 446

Query: 66  XXXXXXXXXXXXXXXXXXXXXVIDPETSLDIFKADPNHLENEKRYQELKKTVLGEEEGSN 125
                                 IDPETSLDIFK DPN+LENEKRY+ELKKT+LGEEE S 
Sbjct: 447 ----------------------IDPETSLDIFKPDPNYLENEKRYEELKKTLLGEEEESE 484

Query: 126 ADEDDESGEES-----------MQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKI 174
            +E  ++  +            MQIKDETETNLV+LRRTIYLTIMSSV+ + AGHKLLKI
Sbjct: 485 GEEGSDAESDEDDESDEEDEEAMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKI 544

Query: 175 HLESGQEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRL 234
           HLE GQEMELC MLLECCSQER YL  YGLLGQR CMI+KVHQENFEKCFVQQYS+ HRL
Sbjct: 545 HLEPGQEMELCTMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSLIHRL 604

Query: 235 ETNKLRNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLG 290
           ETNKLRNVAKFFAHLLGT  LPWHVLSYIRLTE+DTTSSSRIFIKILFQELSEHLG
Sbjct: 605 ETNKLRNVAKFFAHLLGTFALPWHVLSYIRLTEDDTTSSSRIFIKILFQELSEHLG 660


>Medtr7g093510.1 | pre-mRNA-splicing factor CWC22-like protein | HC
           | chr7:37183444-37184811 | 20130731
          Length = 455

 Score =  317 bits (813), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 163/294 (55%), Positives = 206/294 (70%), Gaps = 48/294 (16%)

Query: 6   QFLIEGLFAIRKAKFQGYPAVQSELDVVDIDPEISLDVFKADPNYLENEKRYQELKNSIL 65
           QFLI+ LFA+RK +FQ YPAV  ELD+VD + +++ +V                L  SI 
Sbjct: 128 QFLIQDLFAVRKTRFQSYPAVPPELDLVDEEDQLTHEV---------------SLNESI- 171

Query: 66  XXXXXXXXXXXXXXXXXXXXXVIDPETSLDIFKADPNHLENEKRYQELKKTVLGEEEGSN 125
                                  DPE SLD+F+ DP+++ENEK Y++LKKT+LG+EE   
Sbjct: 172 -----------------------DPEFSLDVFRLDPDYVENEKHYEQLKKTILGDEEEIE 208

Query: 126 ADE--------DDESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKI-HL 176
            D+        D+E GE+ MQI+DE +TNLV+LRR IYLTIMS ++ + AGHKLL+I H 
Sbjct: 209 GDQEGDSVVESDEEDGEKHMQIRDEADTNLVNLRRAIYLTIMSCLDFEEAGHKLLRIIHR 268

Query: 177 ESGQEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLET 236
           + GQE++LC M+L+CC  E++Y   YGLLG+R CMI+KV+Q+NFEKCF QQ S  HRL+T
Sbjct: 269 QKGQEIQLCNMILQCCRYEKVYRPYYGLLGERFCMINKVYQQNFEKCFAQQLSTIHRLQT 328

Query: 237 NKLRNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLG 290
           N+LRNVA+FFAHLL T TLPW+VLSYIRLTEEDTTSSSRIFIKILFQELSEHLG
Sbjct: 329 NQLRNVAQFFAHLLATSTLPWNVLSYIRLTEEDTTSSSRIFIKILFQELSEHLG 382


>Medtr7g093340.1 | pre-mRNA-splicing factor CWC22-like protein | HC
           | chr7:37085194-37084469 | 20130731
          Length = 241

 Score =  245 bits (626), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 139/162 (85%), Gaps = 1/162 (0%)

Query: 130 DESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKI-HLESGQEMELCIML 188
           +E GE+ MQI+DET+TNLV+LRR IYLTIMS ++ + AGHKLL+I H + GQE++LC M+
Sbjct: 7   EEDGEKQMQIRDETDTNLVNLRRAIYLTIMSCLDFEEAGHKLLRIIHRQKGQEIQLCNMI 66

Query: 189 LECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLETNKLRNVAKFFAH 248
           L+CC  E++Y   YGLLG+R CMI+KV+Q+NFEKCF QQ S  HRL+TN+LRNVA+FFAH
Sbjct: 67  LQCCRYEKVYRPYYGLLGERFCMINKVYQQNFEKCFAQQLSTIHRLQTNQLRNVAQFFAH 126

Query: 249 LLGTDTLPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLG 290
           LL T  LPW+VLSYIRLTEEDTTS+SRIFIKILFQELSEHLG
Sbjct: 127 LLATSALPWNVLSYIRLTEEDTTSASRIFIKILFQELSEHLG 168


>Medtr5g034040.1 | DNA-directed RNA polymerase II 8.2 kDa protein |
           LC | chr5:14712702-14705432 | 20130731
          Length = 123

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 47/75 (62%), Gaps = 24/75 (32%)

Query: 159 MSSVNLDGAGHKLLKIHLESGQEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQE 218
           MSSV+ + AGH  LKIHLE GQEMELCIMLLECC                      +HQE
Sbjct: 1   MSSVDFEEAGH--LKIHLERGQEMELCIMLLECC----------------------MHQE 36

Query: 219 NFEKCFVQQYSMTHR 233
           NFEKCFVQQYSM HR
Sbjct: 37  NFEKCFVQQYSMIHR 51


>Medtr7g086290.2 | nucleolar MIF4G domain protein | HC |
           chr7:33455314-33464859 | 20130731
          Length = 670

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 120 EEEGSNADEDDESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKIHLESG 179
           EE  +  D+D    +  +Q+      N  D RR I+  IMS  +   A  KLL++ L   
Sbjct: 441 EEVANKIDKDVAETQRMLQLAAAQRMN-TDSRRAIFCIIMSGEDYIDAFEKLLRLELPGK 499

Query: 180 QEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLETNKL 239
           Q+ ++  +L+ECC QE+++   Y +L  +LC   K H+   + C    +     +   + 
Sbjct: 500 QDRDIMRVLVECCLQEKVFNKYYTVLASKLCEHDKNHKFTLQFCLWDHFKELESMALLRS 559

Query: 240 RNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIF-IKILFQELSEH 288
            ++AKF A +  + TL   VL  + L++    +  RI   +ILF+ + E+
Sbjct: 560 MHLAKFVAEMAASFTLSLAVLKTVDLSDITQLTPKRIMHFRILFEAIFEY 609


>Medtr7g086290.3 | nucleolar MIF4G domain protein | HC |
           chr7:33455314-33464876 | 20130731
          Length = 670

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 120 EEEGSNADEDDESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKIHLESG 179
           EE  +  D+D    +  +Q+      N  D RR I+  IMS  +   A  KLL++ L   
Sbjct: 441 EEVANKIDKDVAETQRMLQLAAAQRMN-TDSRRAIFCIIMSGEDYIDAFEKLLRLELPGK 499

Query: 180 QEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLETNKL 239
           Q+ ++  +L+ECC QE+++   Y +L  +LC   K H+   + C    +     +   + 
Sbjct: 500 QDRDIMRVLVECCLQEKVFNKYYTVLASKLCEHDKNHKFTLQFCLWDHFKELESMALLRS 559

Query: 240 RNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIF-IKILFQELSEH 288
            ++AKF A +  + TL   VL  + L++    +  RI   +ILF+ + E+
Sbjct: 560 MHLAKFVAEMAASFTLSLAVLKTVDLSDITQLTPKRIMHFRILFEAIFEY 609


>Medtr7g086290.4 | nucleolar MIF4G domain protein | HC |
           chr7:33455314-33464859 | 20130731
          Length = 785

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 120 EEEGSNADEDDESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKIHLESG 179
           EE  +  D+D    +  +Q+      N  D RR I+  IMS  +   A  KLL++ L   
Sbjct: 556 EEVANKIDKDVAETQRMLQLAAAQRMN-TDSRRAIFCIIMSGEDYIDAFEKLLRLELPGK 614

Query: 180 QEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLETNKL 239
           Q+ ++  +L+ECC QE+++   Y +L  +LC   K H+   + C    +     +   + 
Sbjct: 615 QDRDIMRVLVECCLQEKVFNKYYTVLASKLCEHDKNHKFTLQFCLWDHFKELESMALLRS 674

Query: 240 RNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIF-IKILFQELSEH 288
            ++AKF A +  + TL   VL  + L++    +  RI   +ILF+ + E+
Sbjct: 675 MHLAKFVAEMAASFTLSLAVLKTVDLSDITQLTPKRIMHFRILFEAIFEY 724


>Medtr7g086290.1 | nucleolar MIF4G domain protein | HC |
           chr7:33455314-33464859 | 20130731
          Length = 786

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 120 EEEGSNADEDDESGEESMQIKDETETNLVDLRRTIYLTIMSSVNLDGAGHKLLKIHLESG 179
           EE  +  D+D    +  +Q+      N  D RR I+  IMS  +   A  KLL++ L   
Sbjct: 557 EEVANKIDKDVAETQRMLQLAAAQRMN-TDSRRAIFCIIMSGEDYIDAFEKLLRLELPGK 615

Query: 180 QEMELCIMLLECCSQERIYLHNYGLLGQRLCMISKVHQENFEKCFVQQYSMTHRLETNKL 239
           Q+ ++  +L+ECC QE+++   Y +L  +LC   K H+   + C    +     +   + 
Sbjct: 616 QDRDIMRVLVECCLQEKVFNKYYTVLASKLCEHDKNHKFTLQFCLWDHFKELESMALLRS 675

Query: 240 RNVAKFFAHLLGTDTLPWHVLSYIRLTEEDTTSSSRIF-IKILFQELSEH 288
            ++AKF A +  + TL   VL  + L++    +  RI   +ILF+ + E+
Sbjct: 676 MHLAKFVAEMAASFTLSLAVLKTVDLSDITQLTPKRIMHFRILFEAIFEY 725


>Medtr5g096330.1 | hypothetical protein | LC |
           chr5:42122120-42122539 | 20130731
          Length = 106

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 9/87 (10%)

Query: 98  KADPNHLENEKRYQELKKTVLGEEEGSNADEDDESGEESMQIKDETETNLVDLRRTIYLT 157
           +  PN+  NEKRY+ELK   LG++E    ++++      +      + NL++LRR+IYLT
Sbjct: 16  QPGPNYANNEKRYEELKS--LGKKEVEECEDEESEETSEI------DMNLINLRRSIYLT 67

Query: 158 IMSSVNLDGAGHKLLKIHLESGQEMEL 184
            MS ++ + A +KLLKI +E G+++ +
Sbjct: 68  NMSCIDFEEAANKLLKI-IEQGKKVSI 93