Miyakogusa Predicted Gene

Lj2g3v2326310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2326310.1 tr|B9MXY2|B9MXY2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_921060 PE=4
SV=1,40.68,8e-16,APO,APO domain; APO_RNA-bind,APO domain; APO3
(ACCUMULATION OF PHOTOSYSTEM ONE 3),NULL; EUKARYOTIC T,CUFF.38856.1
         (427 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g072520.1 | APO RNA-binding protein | HC | chr5:30879261-3...   533   e-152
Medtr2g088390.1 | APO RNA-binding protein | HC | chr2:37254350-3...   315   7e-86
Medtr2g067610.1 | APO RNA-binding protein | HC | chr2:28298590-2...   308   7e-84
Medtr6g059930.2 | APO RNA-binding protein | HC | chr6:20582557-2...   301   8e-82
Medtr6g059930.1 | APO RNA-binding protein | HC | chr6:20583169-2...   300   1e-81
Medtr2g088750.1 | APO RNA-binding protein | HC | chr2:37418951-3...   184   2e-46
Medtr1g054885.1 | photosystem one accumulation protein | HC | ch...    80   3e-15

>Medtr5g072520.1 | APO RNA-binding protein | HC |
           chr5:30879261-30876789 | 20130731
          Length = 442

 Score =  533 bits (1374), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 245/296 (82%), Positives = 274/296 (92%)

Query: 131 FCDEVHIGFVGHEIRTCTGPQSRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHD 190
           FC+EVHIG+VGHEIRTCTGP+S LRSA HVW+RGGV++V+ FP+CFHLYDRVGKPRVGHD
Sbjct: 1   FCNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHD 60

Query: 191 ERFSVPRIPAIVELCIQAGLDLEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVE 250
           ERFSVPRIPAI+ELCIQAGLDL+K+PTKRRTKPVYCIEGRIADFESVAE++E +R  S E
Sbjct: 61  ERFSVPRIPAIIELCIQAGLDLKKFPTKRRTKPVYCIEGRIADFESVAEDNEIERNSSFE 120

Query: 251 NLNNFVGSSSILTKPVEKVHNLMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQ 310
           N+N    SS +L +PVEKV +L+ N IS++DQLSDE+RNKLRDL +  LDSWFEM SGA+
Sbjct: 121 NVNPLTDSSYMLKEPVEKVQSLLENKISHMDQLSDEERNKLRDLSKHALDSWFEMISGAK 180

Query: 311 KIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHV 370
           KIMEKYVVN CGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEAT+DD+VGPN+VWHV
Sbjct: 181 KIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGPNFVWHV 240

Query: 371 EDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPDQYKSMMRLDVVSPGRDEVDLV 426
           EDLNGPALNNN+KRYYGKAPAVVELCVHAGAP+PDQYKSMMRLDVVSP RDEVDLV
Sbjct: 241 EDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVVSPERDEVDLV 296



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 113 LLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLRSAMHVWRRGGVRNVIFF 172
           ++SG  +++    V  CG+C EV +G  GH++R C   + + R+ +H W+   + +++  
Sbjct: 175 MISGAKKIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGP 234

Query: 173 PRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAG 209
              +H+ D  G P + ++ +    + PA+VELC+ AG
Sbjct: 235 NFVWHVEDLNG-PALNNNIKRYYGKAPAVVELCVHAG 270


>Medtr2g088390.1 | APO RNA-binding protein | HC |
           chr2:37254350-37249092 | 20130731
          Length = 447

 Score =  315 bits (806), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 160/367 (43%), Positives = 228/367 (62%), Gaps = 22/367 (5%)

Query: 53  SKAERKPYVTPMKVLIXXXXXXXXXXXXXPCRVLEEAPENGLLVPELVEVAHRVYQAHRT 112
           S+ E+KP+  P+  L              P R    AP+NGLLV  L+  A+ VY A  T
Sbjct: 94  SRKEKKPFPVPIVELRRAARERIKKMKDEPRRKPMPAPKNGLLVKNLIPEAYDVYNARIT 153

Query: 113 LLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLRSAMHVWRRGGVRNVIFF 172
           L++ L +L++V+PV  CG+C E+H+G VGH  ++C G QS +R  +H W    V +++  
Sbjct: 154 LINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIP 213

Query: 173 PRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKYPTKRRTKPVYCIEGRIA 232
              FHLYDR+GK R+ H++RFS+PRIPA+VELCIQAG+ + ++PTKRR KP+     RI 
Sbjct: 214 IDAFHLYDRLGK-RITHEQRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPII----RIG 268

Query: 233 DFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVNNISNLDQLSDEDRNKLR 292
             E V + DE++       L + V  +   T+P       ++  I + D ++  ++ ++ 
Sbjct: 269 KKEFV-DADESE-------LPDEVPDNP--TQP-------LIAEIPDSDIVAPVNKEEVV 311

Query: 293 DLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHA 352
            L  +TL +W +M  G +++M  Y V +CGYCPE+ VGP GHK + C A KHQ RNG H 
Sbjct: 312 HLAEETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHG 371

Query: 353 WQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPDQYKSMMR 412
           WQ A +DDL+ P +VWHV D+NGP L   LK +YG+APAVVE+C+ AGA +P+QYKS MR
Sbjct: 372 WQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMR 431

Query: 413 LDVVSPG 419
           LDV  P 
Sbjct: 432 LDVGIPS 438



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 23/221 (10%)

Query: 224 VYCIEG------RIADFESVAEEDETKRKCSVENLNNFVGSSSILTK---PVEKVHNLMV 274
           +YC+ G      + +D+++ +++  +K +  V    +F    S   K   PV  V  L  
Sbjct: 52  LYCLSGPRKENNQKSDYDATSKDSGSKNRNEVPQNADFHRHYSRKEKKPFPVPIV-ELRR 110

Query: 275 NNISNLDQLSDEDRNK----------LRDLGRQTLDSW---FEMTSGAQKIMEKYVVNMC 321
                + ++ DE R K          +++L  +  D +     + +  +K+++   V+ C
Sbjct: 111 AARERIKKMKDEPRRKPMPAPKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHAC 170

Query: 322 GYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNN 381
           G+C E+ VGP GH  + CK ++   R G+H W  A ++D++ P   +H+ D  G  + + 
Sbjct: 171 GWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHE 230

Query: 382 LKRYYGKAPAVVELCVHAGAPIPDQYKSMMRLDVVSPGRDE 422
            +    + PAVVELC+ AG  I +      R  ++  G+ E
Sbjct: 231 QRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPIIRIGKKE 271


>Medtr2g067610.1 | APO RNA-binding protein | HC |
           chr2:28298590-28300383 | 20130731
          Length = 329

 Score =  308 bits (789), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 216/330 (65%), Gaps = 22/330 (6%)

Query: 89  APENGLLVPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCT 148
           AP+NGLLV  L+  A+ VY A  TL++ L +L++V+PV  CG+C E+H+G VGH  ++C 
Sbjct: 12  APKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCK 71

Query: 149 GPQSRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQA 208
           G QS +R  +H W    V +++     FHLYDR+GK R+ H++RFS+PRIPA+VELCIQA
Sbjct: 72  GTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGK-RITHEQRFSIPRIPAVVELCIQA 130

Query: 209 GLDLEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEK 268
           G+ + ++PTKRR KP+     RI   E V + DE++       L + V  +   T+P   
Sbjct: 131 GVKIREFPTKRRRKPII----RIGKKEFV-DADESE-------LPDEVPDNP--TQP--- 173

Query: 269 VHNLMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQ 328
               ++  I + D ++  ++ ++  L  +TL +W +M  G +++M  Y V +CGYCPE+ 
Sbjct: 174 ----LIAEIPDSDIVAPVNKEEVVHLAEETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIH 229

Query: 329 VGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGK 388
           VGP GHK + C A KHQ RNG H WQ A +DDL+ P +VWHV D+NGP L   LK +YG+
Sbjct: 230 VGPSGHKAQNCGAHKHQQRNGQHGWQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQ 289

Query: 389 APAVVELCVHAGAPIPDQYKSMMRLDVVSP 418
           APAVVE+C+ AGA +P+QYKS MRLDV  P
Sbjct: 290 APAVVEMCIQAGAALPEQYKSTMRLDVGIP 319



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 64/118 (54%)

Query: 305 MTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGP 364
           + +  +K+++   V+ CG+C E+ VGP GH  + CK ++   R G+H W  A ++D++ P
Sbjct: 36  LINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIP 95

Query: 365 NYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPDQYKSMMRLDVVSPGRDE 422
              +H+ D  G  + +  +    + PAVVELC+ AG  I +      R  ++  G+ E
Sbjct: 96  IDAFHLYDRLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPIIRIGKKE 153


>Medtr6g059930.2 | APO RNA-binding protein | HC |
           chr6:20582557-20579088 | 20130731
          Length = 419

 Score =  301 bits (771), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 207/340 (60%), Gaps = 20/340 (5%)

Query: 88  EAPENGLLVPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTC 147
           E P+NGLLVP+LV VA+ V+ A + L+ GLSQL+ VIP   C  C EVH+   GH I  C
Sbjct: 100 EPPKNGLLVPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDC 159

Query: 148 TGPQSRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQ 207
            G  S  R + H W RG V +++     +HL+D  GK R+ HD RF   RIPA+VELCIQ
Sbjct: 160 EGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGK-RIMHDTRFEYDRIPAVVELCIQ 218

Query: 208 AGLDLEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVE 267
           AG+D+ +YP++RRT P+  +  R+ D     EE +  R     ++ +F            
Sbjct: 219 AGVDIPEYPSRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDF------------ 266

Query: 268 KVHNLMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEV 327
                  +     ++      + +  + ++T+D++  +  G +K+M+KY V  CGYC EV
Sbjct: 267 -------DTYRACERFPPPPLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEV 319

Query: 328 QVGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYG 387
            VGP GH  ++C + KHQ R+G H WQ+AT+D+++ PNYVWHV D NGP +   LKRYYG
Sbjct: 320 HVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYG 379

Query: 388 KAPAVVELCVHAGAPIPDQYKSMMRLDVVSPGRDEVDLVA 427
           KAPAVVE+CV AGA IP +YK +MRLD+V P  DE  ++A
Sbjct: 380 KAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTDEAGMIA 419


>Medtr6g059930.1 | APO RNA-binding protein | HC |
           chr6:20583169-20579100 | 20130731
          Length = 451

 Score =  300 bits (769), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 207/340 (60%), Gaps = 20/340 (5%)

Query: 88  EAPENGLLVPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTC 147
           E P+NGLLVP+LV VA+ V+ A + L+ GLSQL+ VIP   C  C EVH+   GH I  C
Sbjct: 132 EPPKNGLLVPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDC 191

Query: 148 TGPQSRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQ 207
            G  S  R + H W RG V +++     +HL+D  GK R+ HD RF   RIPA+VELCIQ
Sbjct: 192 EGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGK-RIMHDTRFEYDRIPAVVELCIQ 250

Query: 208 AGLDLEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVE 267
           AG+D+ +YP++RRT P+  +  R+ D     EE +  R     ++ +F            
Sbjct: 251 AGVDIPEYPSRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDF------------ 298

Query: 268 KVHNLMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEV 327
                  +     ++      + +  + ++T+D++  +  G +K+M+KY V  CGYC EV
Sbjct: 299 -------DTYRACERFPPPPLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEV 351

Query: 328 QVGPKGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYG 387
            VGP GH  ++C + KHQ R+G H WQ+AT+D+++ PNYVWHV D NGP +   LKRYYG
Sbjct: 352 HVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYG 411

Query: 388 KAPAVVELCVHAGAPIPDQYKSMMRLDVVSPGRDEVDLVA 427
           KAPAVVE+CV AGA IP +YK +MRLD+V P  DE  ++A
Sbjct: 412 KAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTDEAGMIA 451


>Medtr2g088750.1 | APO RNA-binding protein | HC |
           chr2:37418951-37422309 | 20130731
          Length = 344

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 162/322 (50%), Gaps = 49/322 (15%)

Query: 96  VPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLR 155
           V  ++ VA+ V  A   L+ G+S L+   P++ C FC E++IG  GH I TC G + R +
Sbjct: 55  VRAMIPVANEVLLARNVLIHGVSTLINSFPLMACKFCPEIYIGEQGHLIPTCRGYKRRAK 114

Query: 156 SAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKY 215
           + +H W +GG+ +++     FHL + + +  + HD+RF   RI A+VELC QAG D+   
Sbjct: 115 NRVHEWVKGGLNDILVPVETFHL-NNMFQNVIRHDQRFDFDRIAAVVELCWQAGADVP-- 171

Query: 216 PTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVN 275
                                    DE           N   SSS          NL   
Sbjct: 172 ------------------------HDE-----------NLSPSSS----------NLEAA 186

Query: 276 NISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHK 335
           N  N+D       N L  + ++TL++W  + SG +K++  Y V +C YC EV VGP GHK
Sbjct: 187 N-GNVDGFESLSPNVLAVVAKKTLEAWDVLRSGVEKLLLVYPVKVCKYCSEVHVGPSGHK 245

Query: 336 LRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVEL 395
            R+C   KH+S  G H W +A +D+LV P  VW     + P L N  + +YG+ PAV++L
Sbjct: 246 ARLCGVFKHESWKGAHFWTKANVDNLVPPKIVWRRRPQDPPVLVNEGRDFYGRVPAVLDL 305

Query: 396 CVHAGAPIPDQYKSMMRLDVVS 417
           C  AG  +P +Y  +M++  +S
Sbjct: 306 CTKAGVIVPAKYNVLMKVQGLS 327


>Medtr1g054885.1 | photosystem one accumulation protein | HC |
           chr1:24065884-24068179 | 20130731
          Length = 82

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 347 RNGLHAWQEATIDDLVGPNYVWHVEDLN-GPALNNNLKRYYGKAPAVVELCVHAGAPIPD 405
           R+G H WQEATI+D V P YV+H+ D   G  L N LKRYYG  PAVVEL   AGAP+  
Sbjct: 2   RDGQHEWQEATINDFVPPVYVYHIRDQQPGKPLVNELKRYYGMLPAVVELFSQAGAPVEK 61

Query: 406 QYKSMMRLDVVSPGRDE 422
            Y   MR DVV P  DE
Sbjct: 62  IYGHTMR-DVVVPDMDE 77