Miyakogusa Predicted Gene
- Lj2g3v2246170.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2246170.1 Non Characterized Hit- tr|I1JHC2|I1JHC2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.49,0,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; RNA-BINDING PROTEIN,NULL; no
description,Nucleo,CUFF.38759.1
(395 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 474 e-134
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 62 8e-10
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 60 5e-09
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 59 6e-09
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 59 6e-09
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 59 6e-09
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 59 7e-09
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 59 8e-09
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 58 2e-08
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 58 2e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 57 5e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 56 5e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 1e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 54 3e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 54 3e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 3e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 53 5e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 53 5e-07
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 53 5e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 53 5e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 51 2e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 50 5e-06
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 6e-06
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 7e-06
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/398 (65%), Positives = 289/398 (72%), Gaps = 8/398 (2%)
Query: 1 MNPLTLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYG 60
MNPLTLVKRIQ INS+EAAL I E+ASWH KYKDSAYVF+GGIPFD TEGD++AVFAQYG
Sbjct: 1 MNPLTLVKRIQQINSREAALNISEDASWHTKYKDSAYVFVGGIPFDFTEGDVIAVFAQYG 60
Query: 61 EVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHRXXXXXXXX 120
EVVD+NLVRDKGTGKS G+AF+AYEDQRSTNLAVDNLNGAQ+ GRIIRVDH
Sbjct: 61 EVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVSGRIIRVDHVDKYKKMEE 120
Query: 121 XXXXXXXQNREARGVCRQFQRGECTRGASCKFSHDEQRAANTGWGREEDN--PKWGHDKF 178
Q REARGVCR FQRGECTRGA CKFSHDEQRAANTGWG DN K +DK+
Sbjct: 121 EDEEEAKQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG---DNGIAKGDNDKY 177
Query: 179 EGPKKERRPGNNQSNRIGETIDRDSRSRAQSE-MGLDYQPKKSDRRDEKVSQRHDGDDKF 237
+GPKKERR GNNQ +RI ET DRDSRSRA M LD K+SDRR+EK+ +R DGD F
Sbjct: 178 DGPKKERRYGNNQPDRIPETRDRDSRSRAHGNGMELDNPSKRSDRREEKMLRRQDGDGNF 237
Query: 238 EGXXXXXXXXXXXXXXHGDDEFEHIPXXXXXXXXXXXXXXNGYDGMEPEPRDHHRREAKR 297
G + DDEFE P NGYD EPEPRD H+RE +R
Sbjct: 238 VGRENTSRREEKRPRDYKDDEFEQWP-REDRHRREEKRSRNGYDDREPEPRD-HKREDRR 295
Query: 298 STNPDDAEFEPQSRDSDIREEKRSRRHDDDDFGSKSRQTHSNREDRRPRKHTEDESAARS 357
S DD +FEP+SRDSD+RE+KR R D DDFGSKSR+T +RE+RR RKHT+DES RS
Sbjct: 296 SIKQDDVKFEPKSRDSDLREDKRPSRRDVDDFGSKSRETQGSREERRSRKHTDDESMPRS 355
Query: 358 RGDYDRKQDNRSYRDDTDRSEPKARYGYDRREEKRSSR 395
R D+DRKQDNRSY D DRSE K R DRREEKRS R
Sbjct: 356 REDHDRKQDNRSYHKDADRSESKGRNDSDRREEKRSRR 393
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
S +FI G+P TE L VF+ +GEV V L+ DK TG+SLG+A++ + ++ S A
Sbjct: 69 SSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSA 128
Query: 94 VDNLNGAQILGRIIRVD 110
+NG GR I V
Sbjct: 129 AKEMNGKLFYGRFIYVT 145
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 14 NSKEAALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGT 73
++ +A LG G K D ++IG +P L + L+ +F Q+GE+V +++D+ T
Sbjct: 433 STPQAGLGAGAVK----KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRIT 488
Query: 74 GKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
G S GY F+ Y D N A+ +NG ++ GR I V
Sbjct: 489 GLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAV 524
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + RD+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + RD+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + RD+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + RD+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGT-GKSLGYAFLAYEDQRSTNL 92
D + +++GG+P+ T+ + VF YG ++DV ++ D+ T GK Y F+ + + RS
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKC--YCFVTFTNPRSAID 62
Query: 93 AVDNLNGAQILGRIIRVD 110
A++++NG I GR+++V+
Sbjct: 63 AINDMNGRTINGRVVKVN 80
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGT-GKSLGYAFLAYEDQRSTNL 92
D + +++GG+P+ T+ + VF YG ++DV ++ D+ T GK Y F+ + + RS
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKC--YCFVTFTNPRSAID 62
Query: 93 AVDNLNGAQILGRIIRVD 110
A++++NG I GR+++V+
Sbjct: 63 AINDMNGRTINGRVVKVN 80
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+G IP+D TE L + + G V+ LV D+ TGK GY F Y D+ + A NL
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 98 NGAQILGRIIRVD 110
G +I GR +RVD
Sbjct: 91 QGYEINGRQLRVD 103
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + +D+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + +D+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + +D+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +F +YG+VVD+ + +D+ TG+S G+AF+ Y+ + A
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKA 73
Query: 94 VDNLNGAQILGRIIRV 109
VD L+G + GR I V
Sbjct: 74 VDRLDGRMVDGREITV 89
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
S +FI G+P TE L VF+ +GEV V L+ DK TG+SLG+A++ + ++ S A
Sbjct: 69 SSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSA 128
Query: 94 VDNLNG 99
+NG
Sbjct: 129 AKEMNG 134
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y+D T++A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D ++ D+ + G++V++ L++D+ TG+S GYAF+ Y+ + A+D++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 98 NGAQILGRIIRV 109
+ + G+ +R
Sbjct: 166 HNKEFKGKTLRC 177
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D ++ D+ + G++V++ L++D+ TG+S GYAF+ Y+ + A+D++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 98 NGAQILGRIIRV 109
+ + G+ +R
Sbjct: 166 HNKEFKGKTLRC 177
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D ++ D+ + G++V++ L++D+ TG+S GYAF+ Y+ + A+D++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 98 NGAQILGRIIRV 109
+ + G+ +R
Sbjct: 166 HNKEFKGKTLRC 177
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 25 EASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAY 84
EAS A K + +F+ G+ F +E L A F +GE+V+V ++ DK + +S GYAF+ Y
Sbjct: 182 EASQEASVK-TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEY 240
Query: 85 EDQRSTNLAVDNLNGAQILGRIIRVD 110
+ + + A+ +NG I G +I VD
Sbjct: 241 TTEEAASAALKEMNGKIINGWMIVVD 266
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + L F+QYGE+VD ++ D+ TG+S G+ F+ + +++S N A++ +
Sbjct: 8 CFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAM 67
Query: 98 NGAQILGRIIRVDH 111
NG + GR I V+
Sbjct: 68 NGQDLDGRNITVNQ 81
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + L F+QYGE++D ++ D+ TG+S G+ F+ + D++S A++ +
Sbjct: 10 CFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGM 69
Query: 98 NGAQILGRIIRVD 110
NG + GR I V+
Sbjct: 70 NGQDMDGRNITVN 82
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + ++VRDK TG S GY F Y+D T++A L
Sbjct: 285 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 344
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 345 NGLKMGDKTLTV 356
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+FIGG+ + E L F++YGEV+D ++ D+ TG+S G+ F+ + + A+ L
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 98 NGAQILGRIIRVDH 111
+G + GR +RV++
Sbjct: 104 DGQDLHGRRVRVNY 117
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + L F+QYGE+VD ++ D+ TG+S G+ F+ + +++S N A++ +
Sbjct: 8 CFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAM 67
Query: 98 NGAQILGRIIRVDH 111
NG + GR I V+
Sbjct: 68 NGQDLDGRNITVNQ 81
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + ++VRDK TG S GY F Y+D T++A L
Sbjct: 300 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 359
Query: 98 NGAQILGRIIRV 109
NG ++ + + V
Sbjct: 360 NGLKMGDKTLTV 371
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
SA +FIGG+ + E L F++YG+V+D ++ D+ TG+S G+ F+ + + A+
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 95 DNLNGAQILGRIIRVDH 111
++ ++ GR +RV++
Sbjct: 99 QAMDNKELDGRTVRVNY 115
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
SA +FIGG+ + E L F++YG+V+D ++ D+ TG+S G+ F+ + + A+
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 95 DNLNGAQILGRIIRVDH 111
++ ++ GR +RV++
Sbjct: 99 QAMDNKELDGRTVRVNY 115
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + +LV+D+ TG S GYAF Y D T++A L
Sbjct: 362 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACAAL 421
Query: 98 NGAQI 102
NG ++
Sbjct: 422 NGIKM 426
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+ F TE L F+ YG+VV+ ++ D+ + KS GY F+ + Q A+ +
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 98 NGAQILGRIIRVDH 111
N + GR++ VD+
Sbjct: 94 NEKALNGRVVFVDY 107
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ +++G +PF +T L +FA+ G VV V +V D+ T +S G+AF+ + A
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
Query: 94 VDNLNGAQILGRIIRVDH 111
+ +G+Q+ GR +V+
Sbjct: 167 IRMFDGSQVGGRSAKVNF 184
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + ++VRDK TG S GY F Y+D T++A L
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 98 NGAQI 102
NG ++
Sbjct: 197 NGLKM 201
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+P+ TE + + +G + ++VRDK TG S GY F Y+D T++A L
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 98 NGAQI 102
NG ++
Sbjct: 240 NGLKM 244
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+GG+ D TE DL VF++ G V +V L+ + T K+ G+AFL +E+ AV L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 98 NGAQILGR 105
I G+
Sbjct: 277 KNPVINGK 284
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+GG+ D TE DL VF++ G V +V L+ + T K+ G+AFL +E+ AV L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 98 NGAQILGR 105
I G+
Sbjct: 277 KNPVINGK 284
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+ + +P+ L++ D+ +F Q G V+DV +++ K GK GY F+ + AVD
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 98 NGAQILGRIIRVD 110
N +I GRI+RV+
Sbjct: 157 NATEISGRILRVE 169
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+GG+ D TE DL VF++ G V +V L+ + T K+ G+AFL +E+ AV L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 98 NGAQILGR 105
I G+
Sbjct: 276 KNPVINGK 283
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+GG+ D TE DL VF++ G V +V L+ + T K+ G+AFL +E+ AV L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 98 NGAQILGR 105
I G+
Sbjct: 276 KNPVINGK 283
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + L F+++GE+ D ++ D+ TG+S G+ F+ + +++S A++ +
Sbjct: 10 CFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 98 NGAQILGRIIRVDH 111
NG I GR I V+
Sbjct: 70 NGQDIDGRNITVNE 83
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 47/74 (63%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+ + + E L F+ +G+V +V +V DK +G++ G+ F+ + ++ + A D +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 98 NGAQILGRIIRVDH 111
+G +LGR +R++
Sbjct: 98 DGKALLGRPLRINF 111
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++ G+ F TE L F +G++VDVNLV DK + G+AFL Y + + A++ +
Sbjct: 97 LYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGM 156
Query: 98 NGAQILGRIIRVD 110
+G + GR+I V+
Sbjct: 157 HGKFLDGRVIFVE 169
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 46/74 (62%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++GG+ ++ E L A F +G++ DV D+ T K + F+ + ++ + A+DN+
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 98 NGAQILGRIIRVDH 111
+GA++ GR++ V++
Sbjct: 72 DGAELYGRVLTVNY 85
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 36 AYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVD 95
A +FI IP + + +L F +G V+ + DK TG S + F++Y+ + A+
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 96 NLNGAQILGRIIRVDHR 112
+NG Q+ G+ ++V H+
Sbjct: 408 MMNGCQLGGKKLKVQHK 424
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 36 AYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVD 95
A +FI IP + + +L F +G V+ + DK TG S + F++Y+ + A+
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 96 NLNGAQILGRIIRVDHR 112
+NG Q+ G+ ++V H+
Sbjct: 409 MMNGCQLGGKKLKVQHK 425
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D DL + GEVV V +++ K ++ G+AF+ Y + + A++ L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 98 NGAQILGRIIR 108
N + GR I+
Sbjct: 172 NNTEFKGRKIK 182
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 31 KYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRST 90
++ S +FI G+ ++ E L F Q+G++++V ++ + TG+S GY F+ + + +
Sbjct: 28 RHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAA 87
Query: 91 NLAVDNLNGAQILGRIIRVDH 111
A L+G + GR IRV +
Sbjct: 88 ATARKELHGQIVDGRRIRVGY 108
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 39 FIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLN 98
++G +P+D+ L +F+++G+V +V D+ TG+S G+ F+ ++ N A+ L+
Sbjct: 219 YVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALD 278
Query: 99 GAQILGRIIRVD 110
G GR IRV+
Sbjct: 279 GQSFNGRAIRVN 290
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQ----RSTNLA 93
VF+G +PF+++ LL+ F++YGE+ + L DK +GK+ G+AF Y+ + S +
Sbjct: 165 VFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAES 224
Query: 94 VDNLNGAQILGRIIRVDHR 112
+ ++G Q++ + VD++
Sbjct: 225 MKTVDGHQVICK-FAVDNK 242
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 29 HAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQR 88
+ ++ S+ +FIGG+ +++ + L F YG+VV+ ++ D+ TG+S G+ F+ + +
Sbjct: 29 YLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEE 88
Query: 89 STNLAVDNLNGAQILGRIIRVDH 111
S A+ +++G + GR IRV +
Sbjct: 89 SATSAL-SMDGQDLNGRNIRVSY 110
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 1 MNPLTLVKRIQNINSKEAALGIGEEASWHA-KYKDSAYVFIGGIPFDLTEGDLLAVFAQY 59
M L IQ+IN L + ++ A + SA +++GGI + + L FA+Y
Sbjct: 7 MGKLLKNSAIQHINHD---LSMSTPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARY 63
Query: 60 GEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDH 111
G+V+D ++ D+ G+S G+ F+ + + A+ ++ ++ GR +RV++
Sbjct: 64 GDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAMDNQELHGRTVRVNY 115
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D DL + GEVV V +++ K ++ G+AF+ Y + + A++ L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 98 NGAQILGRIIRV 109
N + GR I+
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D DL + GEVV V +++ K ++ G+AF+ Y + + A++ L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 98 NGAQILGRIIRV 109
N + GR I+
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D DL + GEVV V +++ K ++ G+AF+ Y + + A++ L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 98 NGAQILGRIIRV 109
N + GR I+
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 40 IGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNG 99
+ G+ + E L F++YGEV+D ++ D+ TG+S G+ F+ + + A+ L+G
Sbjct: 54 VAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDG 113
Query: 100 AQILGRIIRVDH 111
+ GR +RV++
Sbjct: 114 QDLHGRRVRVNY 125
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GGI ++ E L F++YG+V+D ++ D+ +G+S G+ F+ Y + A+ L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 98 NGAQILGRIIRVD 110
+G + GR + V+
Sbjct: 106 DGQDLYGRRVGVN 118
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GGI ++ E L F++YG+V+D ++ D+ +G+S G+ F+ Y + A+ L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 98 NGAQILGRIIRVD 110
+G + GR + V+
Sbjct: 106 DGQDLYGRRVGVN 118
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 34 DSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
D+ Y +F+GG+ ++ L F Q+G++++ ++ D+ TGKS GY F+ ++D S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 92 LAVDNLN 98
LA N N
Sbjct: 82 LACQNPN 88
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 34 DSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
D+ Y +F+GG+ ++ L F Q+G++++ ++ D+ TGKS GY F+ ++D S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 92 LAVDNLN 98
LA N N
Sbjct: 82 LACQNPN 88
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 34 DSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
D+ Y +F+GG+ ++ L F Q+G++++ ++ D+ TGKS GY F+ ++D S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 92 LAVDNLN 98
LA N N
Sbjct: 82 LACQNPN 88
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+ G+ F TE L F+QYG VV ++V +K + G+ ++ + ++ A +
Sbjct: 34 IFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGM 93
Query: 98 NGAQILGRIIRVD 110
NG + GR++ VD
Sbjct: 94 NGKILHGRVLYVD 106
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 34 DSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
D+ Y +F+GG+ ++ L F Q+G++++ ++ D+ TGKS GY F+ ++D S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 92 LAVDNLN 98
LA N N
Sbjct: 82 LACQNPN 88