Miyakogusa Predicted Gene

Lj2g3v2245130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2245130.1 tr|B9GIU2|B9GIU2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_549087 PE=4
SV=1,42.72,0.00000004,seg,NULL,CUFF.38755.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g069980.1 | hypothetical protein | HC | chr5:29659585-2966...   140   4e-34
Medtr3g462980.1 | hypothetical protein | HC | chr3:25209933-2521...    80   7e-16
Medtr3g462960.1 | hypothetical protein | HC | chr3:25197902-2519...    76   7e-15

>Medtr5g069980.1 | hypothetical protein | HC |
           chr5:29659585-29660737 | 20130731
          Length = 126

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 79/101 (78%)

Query: 1   MSHKGHFNEKASLSWRQNSSRKSARNRHVRSCIFRIPWQSEFSPVELMKDLAERVTNALR 60
           +S+K   NEK S SWRQNS+RKSARNRHVRSC FRIPWQSEFSP+EL+KDLAERVTNALR
Sbjct: 5   VSNKMSHNEKTSFSWRQNSNRKSARNRHVRSCTFRIPWQSEFSPIELVKDLAERVTNALR 64

Query: 61  LVSLKRPLHRDTXXXXXXXXXXXXXDSYRTAAVEDCIEFIH 101
           LVS +R L+RD+              S+RTAAVEDCIEFIH
Sbjct: 65  LVSRRRSLNRDSSSLGRSASAGSSAASHRTAAVEDCIEFIH 105


>Medtr3g462980.1 | hypothetical protein | HC |
           chr3:25209933-25210777 | 20130731
          Length = 132

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 1   MSHKGHFNEKASLSWRQNSSRKS-ARNRHVRSC-IFRIPWQSEFSPVELMKDLAERVTNA 58
           M+   +  EK S+ W++N  ++S ARN H + C I RIPW+SEFSP+E +K +AE+V  A
Sbjct: 1   MNSTNYLFEKTSMPWKKNIRKRSEARNLHGKCCCIIRIPWKSEFSPIEFLKGVAEKVKKA 60

Query: 59  LRLVSLKRPLHRDTXXXXXXXXXXXXXDSYRTAAVEDCIEFIH 101
           + L S++R  +R +             D +R AAVEDCIEF H
Sbjct: 61  MCLSSVRRSSNRVSSSMGRSSTIGVSVDYFRAAAVEDCIEFFH 103


>Medtr3g462960.1 | hypothetical protein | HC |
           chr3:25197902-25198397 | 20130731
          Length = 118

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 13  LSWRQNSSRKSARNRHVRSCIFRIPWQSEFSPVELMKDLAERVTNALRLVSLKRPLHR-D 71
           +SW+++  +++ RN H + CI RIPW+ EF P+E +K + ERVT A+ L S++R  +R  
Sbjct: 1   MSWKKSIKKRAERNLHGKCCITRIPWRFEFFPIEFLKGVGERVTKAMCLSSVRRSSNRVS 60

Query: 72  TXXXXXXXXXXXXXDSYRTAAVEDCIEFIH 101
                         D +R AAVEDCIE  H
Sbjct: 61  PSSMGRSKTIGVSVDYFRAAAVEDCIELFH 90