Miyakogusa Predicted Gene

Lj2g3v2220800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2220800.1 Non Characterized Hit- tr|I1MB77|I1MB77_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,85.98,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; seg,NULL;
RNase_E_G,RNA-binding pr,CUFF.38737.1
         (749 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g069430.1 | ribonuclease E/G family protein | HC | chr5:29...  1091   0.0  

>Medtr5g069430.1 | ribonuclease E/G family protein | HC |
            chr5:29439503-29427217 | 20130731
          Length = 1006

 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/778 (71%), Positives = 604/778 (77%), Gaps = 48/778 (6%)

Query: 1    MMIANDKDSHSTTILSENYQPLEEPWLLQSTPSVIXXXXXXXXXXXXXXXXTAKEQVKLV 60
            M I ++KDSH   +LSENYQP+EEPWLL S  SVI                  KEQVKLV
Sbjct: 244  MAILSNKDSHPINVLSENYQPVEEPWLLHSLRSVISEDKTESNESKTND--IVKEQVKLV 301

Query: 61   DTEKLLPEESSN--------------------------------IISKDPVSTIILINSS 88
            D+E+LLPEESSN                                 I KDPVSTIILINSS
Sbjct: 302  DSEELLPEESSNAILKDPVSTIILINSSMKSVDSEELLPEESSNTILKDPVSTIILINSS 361

Query: 89   ICTMQRIAXXXXXXXXXXXXXXXKSNVQCDSVYVGVITKLVPHMGGAFVNIGNSRPALMD 148
            ICTMQRIA               K+NVQ DSVYVG ITKLVP MGGA V+IGNSRP+LMD
Sbjct: 362  ICTMQRIAVLEDEKLVELLLEPVKTNVQSDSVYVGEITKLVPSMGGALVDIGNSRPSLMD 421

Query: 149  IKQYKGPFIFPPFHQRTKKHEVDLKGKNDHIYSATDISDGTSDIHSEDGCLNAVHNDYDE 208
            IK YK PFIFPPF +RTKK E+ LKGKNDH+  ATDI  G  DIHSED CL +VHNDYDE
Sbjct: 422  IKPYKEPFIFPPFRRRTKKQEIVLKGKNDHMSRATDIPGGIRDIHSEDDCLKSVHNDYDE 481

Query: 209  HEGDEDSYISEVLEENVNGSMVXXXXXXXXXXXXXGNDVHMEVEMNNSSLSFGMNGSVNS 268
            HE D+D  +SEVL+ENVNGS+V             G DVH E +MNN SLS GMNGS+N 
Sbjct: 482  HETDDDFCLSEVLKENVNGSVVDDEVEADFEDDVEGADVHTEGKMNNGSLSLGMNGSINF 541

Query: 269  HTLQTKNTERVTRVASGENKWTQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLI 328
            H L TK+T+R      GENKW QVR GTKI+VQVVKEGLGTKGPTLTA+P LRSRFWVL 
Sbjct: 542  HILPTKDTKR----EMGENKWIQVRSGTKIVVQVVKEGLGTKGPTLTAFPILRSRFWVLT 597

Query: 329  ARCDKIGVSKKISGVERTRLKVIAKRLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWK 388
             RCDKIGVSKKISG ERTRLKVIAK LQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWK
Sbjct: 598  TRCDKIGVSKKISGAERTRLKVIAKTLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWK 657

Query: 389  NIMEHAKSAALAADEGVEGAVPVILHRAMGQTLSVVQDYFNENVKKMVVDSPRTFYEVTN 448
            NIME+AKS+ALAADE VEGAVP ILHRAMGQTLSVVQDYFNENVKKMVVDSPRTF+EVTN
Sbjct: 658  NIMENAKSSALAADERVEGAVPAILHRAMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTN 717

Query: 449  YLQEIAPDLCDRVELYDKKVPLFDEFKIEGELDNILSKRVPLANGGSLIIEQTEALVSID 508
            YLQ+IAPDLCDRVELY+KKVPLFDE+ IEGELDNILSKRVPLANGGSLIIEQTEALVSID
Sbjct: 718  YLQDIAPDLCDRVELYNKKVPLFDEYNIEGELDNILSKRVPLANGGSLIIEQTEALVSID 777

Query: 509  VNGGHGMLGHGTSQQKAILEVNLTAAKQIARELXXXXXXXXXXXXFIDMTDEVNKRLVYE 568
            VNGGHGML H TS++KAIL+VNL AAKQIAREL            FIDMTDE NKRLVYE
Sbjct: 778  VNGGHGMLDHDTSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMTDEANKRLVYE 837

Query: 569  EVKKAFERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCACCHATGRVEALETSFS 628
            EVKKA ERDRS+VKVSELSRHGLMEITRKRVRPSVTFM+SEPC CCHATGRVEALETSF 
Sbjct: 838  EVKKAIERDRSVVKVSELSRHGLMEITRKRVRPSVTFMVSEPCDCCHATGRVEALETSFF 897

Query: 629  KIEQQICRFLATMDCKADPGNPKSWPKFILRVDHHMCEYLTSGRKTRLAILSSSLKVWIL 688
            KIEQQICR LATM+ K +P  PKSWPKFILRVDHHMC YLTSG+KT+L ILSSSLKVWIL
Sbjct: 898  KIEQQICRILATMNHKGEPQKPKSWPKFILRVDHHMCTYLTSGKKTKLGILSSSLKVWIL 957

Query: 689  LKVARGFTRGAFEVKPFADDKVGKNQNQVALSILRSSEARTKKPGQNLTLVQVKKSKA 746
            LKV+RGFTRG FE+KP+ DDKVG+NQ+QVA+     S+A+ K      T V+V KSKA
Sbjct: 958  LKVSRGFTRGTFEIKPYTDDKVGRNQHQVAV-----SKAKPKS-----TFVRVIKSKA 1005