Miyakogusa Predicted Gene

Lj2g3v2183310.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2183310.3 tr|B9I2B5|B9I2B5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_661646
PE=4,65.89,3e-19,seg,NULL,CUFF.38710.3
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g068710.4 | autophagy-related protein | HC | chr5:29098604...   157   3e-39
Medtr5g068710.1 | autophagy-related protein | HC | chr5:29098584...   157   3e-39
Medtr5g068710.2 | autophagy-related protein | HC | chr5:29098584...   157   3e-39
Medtr5g068710.3 | autophagy-related protein | HC | chr5:29098604...   157   3e-39

>Medtr5g068710.4 | autophagy-related protein | HC |
           chr5:29098604-29102586 | 20130731
          Length = 585

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 94/137 (68%), Gaps = 2/137 (1%)

Query: 1   MHTRIRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTSSSQESPSGVRS 60
           +HTR+R ETAPVTIPHPMMGK SRNLSPNF D              DTSS  ESPSG+RS
Sbjct: 349 LHTRMRSETAPVTIPHPMMGKSSRNLSPNFLDPNRNSLPPLSPRRNDTSS-HESPSGIRS 407

Query: 61  FRKIETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRT-SSKLSFQDDLDDGDFSCX 119
           FRKIE+ KIGQKIVRDSKDDSGRF         PRIG SRT SS+LSFQDDLDDGDFSC 
Sbjct: 408 FRKIESLKIGQKIVRDSKDDSGRFSGLLSSSDSPRIGASRTSSSRLSFQDDLDDGDFSCP 467

Query: 120 XXXXXXXXXXXLSSHNV 136
                      LSSHNV
Sbjct: 468 FDVDDVDPPNVLSSHNV 484


>Medtr5g068710.1 | autophagy-related protein | HC |
           chr5:29098584-29102600 | 20130731
          Length = 584

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 94/137 (68%), Gaps = 2/137 (1%)

Query: 1   MHTRIRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTSSSQESPSGVRS 60
           +HTR+R ETAPVTIPHPMMGK SRNLSPNF D              DTSS  ESPSG+RS
Sbjct: 348 LHTRMRSETAPVTIPHPMMGKSSRNLSPNFLDPNRNSLPPLSPRRNDTSS-HESPSGIRS 406

Query: 61  FRKIETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRT-SSKLSFQDDLDDGDFSCX 119
           FRKIE+ KIGQKIVRDSKDDSGRF         PRIG SRT SS+LSFQDDLDDGDFSC 
Sbjct: 407 FRKIESLKIGQKIVRDSKDDSGRFSGLLSSSDSPRIGASRTSSSRLSFQDDLDDGDFSCP 466

Query: 120 XXXXXXXXXXXLSSHNV 136
                      LSSHNV
Sbjct: 467 FDVDDVDPPNVLSSHNV 483


>Medtr5g068710.2 | autophagy-related protein | HC |
           chr5:29098584-29102586 | 20130731
          Length = 584

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 94/137 (68%), Gaps = 2/137 (1%)

Query: 1   MHTRIRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTSSSQESPSGVRS 60
           +HTR+R ETAPVTIPHPMMGK SRNLSPNF D              DTSS  ESPSG+RS
Sbjct: 348 LHTRMRSETAPVTIPHPMMGKSSRNLSPNFLDPNRNSLPPLSPRRNDTSS-HESPSGIRS 406

Query: 61  FRKIETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRT-SSKLSFQDDLDDGDFSCX 119
           FRKIE+ KIGQKIVRDSKDDSGRF         PRIG SRT SS+LSFQDDLDDGDFSC 
Sbjct: 407 FRKIESLKIGQKIVRDSKDDSGRFSGLLSSSDSPRIGASRTSSSRLSFQDDLDDGDFSCP 466

Query: 120 XXXXXXXXXXXLSSHNV 136
                      LSSHNV
Sbjct: 467 FDVDDVDPPNVLSSHNV 483


>Medtr5g068710.3 | autophagy-related protein | HC |
           chr5:29098604-29102586 | 20130731
          Length = 584

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 94/137 (68%), Gaps = 2/137 (1%)

Query: 1   MHTRIRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTSSSQESPSGVRS 60
           +HTR+R ETAPVTIPHPMMGK SRNLSPNF D              DTSS  ESPSG+RS
Sbjct: 348 LHTRMRSETAPVTIPHPMMGKSSRNLSPNFLDPNRNSLPPLSPRRNDTSS-HESPSGIRS 406

Query: 61  FRKIETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRT-SSKLSFQDDLDDGDFSCX 119
           FRKIE+ KIGQKIVRDSKDDSGRF         PRIG SRT SS+LSFQDDLDDGDFSC 
Sbjct: 407 FRKIESLKIGQKIVRDSKDDSGRFSGLLSSSDSPRIGASRTSSSRLSFQDDLDDGDFSCP 466

Query: 120 XXXXXXXXXXXLSSHNV 136
                      LSSHNV
Sbjct: 467 FDVDDVDPPNVLSSHNV 483