Miyakogusa Predicted Gene
- Lj2g3v2124630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2124630.1 Non Characterized Hit- tr|F6HEH2|F6HEH2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80,3e-17,seg,NULL; PDZ,PDZ domain; RUBREDOXIN_LIKE,Rubredoxin-like
domain; no description,NULL; no descriptio,CUFF.38603.1
(278 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g008050.1 | rubredoxin family protein | HC | chr5:1646673-... 355 2e-98
Medtr5g008050.2 | rubredoxin family protein | HC | chr5:1646673-... 308 3e-84
Medtr3g098520.1 | electron transporter | HC | chr3:44983969-4498... 62 5e-10
>Medtr5g008050.1 | rubredoxin family protein | HC |
chr5:1646673-1649325 | 20130731
Length = 273
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 189/251 (75%), Positives = 209/251 (83%), Gaps = 12/251 (4%)
Query: 1 MSGVVAGSSSSCTATFTTR--RTIQNSHLTTPSKTLTPPRCQKTSFQGLSIVEAKRGVSD 58
MS ++AG+SS ATFTTR +I+N+H+ PSKTLTPP CQKTS GLS+ EAKRGVS
Sbjct: 1 MSAMLAGTSS---ATFTTRSNHSIKNTHIR-PSKTLTPP-CQKTSLLGLSLHEAKRGVSG 55
Query: 59 SFLGVGENYKNGSSSSIARRRLEITAKTAGASKTIEAEVDKPLGLTLGQKPTGGVVITAV 118
SFLG + K+GSSS IAR+RLEITA+TAGASKTIEAEVDKPLGLTLGQK GGVVITAV
Sbjct: 56 SFLG---DNKSGSSS-IARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAV 111
Query: 119 EXXXXXXXXXXXXXDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSR-GAEVD 177
E DQVLYTSSFFGDELWPADKLGFTKTAI AKPDSVYFVVSR GA+VD
Sbjct: 112 EGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVD 171
Query: 178 VKRLPKRPAPPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEEQPESYICPQCQAPKKR 237
VKRLPKRPAPPRFGRKLT+ QKARATHICLDCG+IY L K F++QP++Y CPQCQAPKKR
Sbjct: 172 VKRLPKRPAPPRFGRKLTETQKARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKR 231
Query: 238 FSPYDVNTGRA 248
F+ YDVNTGRA
Sbjct: 232 FAEYDVNTGRA 242
>Medtr5g008050.2 | rubredoxin family protein | HC |
chr5:1646673-1649325 | 20130731
Length = 222
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/225 (74%), Positives = 185/225 (82%), Gaps = 12/225 (5%)
Query: 1 MSGVVAGSSSSCTATFTTR--RTIQNSHLTTPSKTLTPPRCQKTSFQGLSIVEAKRGVSD 58
MS ++AG+SS ATFTTR +I+N+H+ PSKTLTPP CQKTS GLS+ EAKRGVS
Sbjct: 1 MSAMLAGTSS---ATFTTRSNHSIKNTHIR-PSKTLTPP-CQKTSLLGLSLHEAKRGVSG 55
Query: 59 SFLGVGENYKNGSSSSIARRRLEITAKTAGASKTIEAEVDKPLGLTLGQKPTGGVVITAV 118
SFLG + K+GSSS IAR+RLEITA+TAGASKTIEAEVDKPLGLTLGQK GGVVITAV
Sbjct: 56 SFLG---DNKSGSSS-IARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAV 111
Query: 119 EXXXXXXXXXXXXXDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSR-GAEVD 177
E DQVLYTSSFFGDELWPADKLGFTKTAI AKPDSVYFVVSR GA+VD
Sbjct: 112 EGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVD 171
Query: 178 VKRLPKRPAPPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEEQ 222
VKRLPKRPAPPRFGRKLT+ QKARATHICLDCG+IY L K F++Q
Sbjct: 172 VKRLPKRPAPPRFGRKLTETQKARATHICLDCGYIYFLPKSFDDQ 216
>Medtr3g098520.1 | electron transporter | HC |
chr3:44983969-44982538 | 20130731
Length = 159
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 187 PPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEEQPESYICPQCQAPKKRFSPY--DVN 244
PPRF ++ Q +IC DCG+IY + F++ P+ Y CP C APK+RF PY DVN
Sbjct: 56 PPRFTMRVASKQ----AYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVN 111