Miyakogusa Predicted Gene

Lj2g3v2124470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124470.1 Non Characterized Hit- tr|D8U4I2|D8U4I2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.44,0.000002,seg,NULL,CUFF.38591.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008220.1 | transmembrane protein, putative | HC | chr5:17...   258   4e-69

>Medtr5g008220.1 | transmembrane protein, putative | HC |
           chr5:1708619-1706819 | 20130731
          Length = 255

 Score =  258 bits (658), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 159/221 (71%), Gaps = 10/221 (4%)

Query: 32  SFPIGLKPKPNFT--------CQAVFSDDAPFAAAIGACMXXXXXXXXXXXXXXXXXXDA 83
           SF I +KP   F         C+AVF DDAPFAAAIGACM                    
Sbjct: 32  SFGIQIKPSFKFNKDHYRQSYCKAVFVDDAPFAAAIGACMLTSLILPVPVATEEEEESSL 91

Query: 84  ITPTDARFAVMGIISFIPYFNWLSWVFAWLDTRKPRYAVFALVYLAPYLRTNLSISPEES 143
            + TD R AVMGI+SFIPYFNWLSWVFAWLDT   RYAV++LVYLAPYLR+NLSISPE+S
Sbjct: 92  TS-TDTRLAVMGIMSFIPYFNWLSWVFAWLDTGNRRYAVYSLVYLAPYLRSNLSISPEDS 150

Query: 144 WLPIASILFCIVHIQLEASIRNGDIQGFRLFRNIGDQPSSSAGKSGHLNQHEEMSEEGNK 203
           WLPIASILFCIVHIQLEASIRNGD+QGF+LFRN+ DQ SSS+ K G LN+H+EMS +G+K
Sbjct: 151 WLPIASILFCIVHIQLEASIRNGDVQGFQLFRNVMDQQSSSSKKKGRLNRHQEMS-KGSK 209

Query: 204 KGKQNLPPPQVQLRDIGDWDDSQRPPKFQQHLNEDLENDGE 244
             K+NL   +   RDIG W+DSQRP ++QQ L++ ++ D E
Sbjct: 210 NEKKNLLSAEEPSRDIGGWEDSQRPVEYQQRLHDTIDGDSE 250