Miyakogusa Predicted Gene

Lj2g3v2124240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124240.1 Non Characterized Hit- tr|J3MPR3|J3MPR3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G1,36.93,0.00001,seg,NULL,CUFF.38597.1
         (333 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773...   332   4e-91
Medtr7g010340.1 | KH domain protein, putative | HC | chr7:252646...   132   3e-31
Medtr7g010340.2 | KH domain protein, putative | HC | chr7:252646...   132   3e-31

>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
           chr5:1773973-1764791 | 20130731
          Length = 780

 Score =  332 bits (850), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 209/320 (65%), Positives = 222/320 (69%), Gaps = 19/320 (5%)

Query: 1   MAPRSSYGSGWEQRPHHSLQGPPSHXXXXXXXXXXXXHLSDAPPSTQLPSSVPPHGTGPS 60
           MAPRSSYGSGWEQRPH S QGPPSH            H S+AP S Q PSSVP HGTGPS
Sbjct: 420 MAPRSSYGSGWEQRPHQSFQGPPSHNGGYDYYGGQSGHSSEAPSSAQHPSSVPQHGTGPS 479

Query: 61  P--------AQVNYNYGQPQGQEYGHQAPYAQAGHPPQGYAQGYGESKYENHPPTQHPYG 112
           P        AQ+NYNYGQPQGQ+YGHQ PY QAGHP QGY QGY ESKYEN  P Q+PYG
Sbjct: 480 PLPSMGPSPAQMNYNYGQPQGQDYGHQTPYQQAGHPQQGYGQGYDESKYENRGPAQYPYG 539

Query: 113 GHINPQPSYPQAG--PNYAAPQQYGKPPVYGQ-PSHGQAPQSYGHPRATQPGDIPYQGST 169
           GH NPQP+YPQA    NYA PQQYGKPP+YG  PS GQ PQSYGHPRATQPG+IPYQGST
Sbjct: 540 GHSNPQPTYPQASAQANYAPPQQYGKPPLYGVPPSQGQHPQSYGHPRATQPGEIPYQGST 599

Query: 170 PAQSYGTSMPMQQPYPYASSAPTQAAYPTYGSAPAADGYNHPPAASGPVYAQPGGXXX-- 227
           PAQSYGT   +QQPYPYASS P+QAAYPTYGSAPAADGY+HP +A G VYAQPGG     
Sbjct: 600 PAQSYGT---VQQPYPYASSGPSQAAYPTYGSAPAADGYSHPQSAPGQVYAQPGGQPSYG 656

Query: 228 --XXXXXXXXXXXXXXXXXSYP-SQQTYPEQSAPNNAVYGYQAPQDXXXXXXXXXXXXXX 284
                              SYP SQQTYPEQ APN+A YGYQAPQD              
Sbjct: 657 QPGAQAVASYAQVGPTGYGSYPSSQQTYPEQPAPNSAGYGYQAPQDPAYSSGAAQTYSAA 716

Query: 285 XXXXPGYAQPTPTQTGYEQS 304
               PGY QPTPTQTGY+QS
Sbjct: 717 PTVQPGYVQPTPTQTGYDQS 736


>Medtr7g010340.1 | KH domain protein, putative | HC |
           chr7:2526463-2517960 | 20130731
          Length = 560

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 103/186 (55%), Gaps = 48/186 (25%)

Query: 1   MAPRSSYGSGWEQRPHHSLQGPPSHXXXXXXXXXXXXHLSDAPPSTQLPSSVPPHGT--- 57
           MAPRSSYGSGWEQRPH SLQGPPSH            H S+   S   PSS+P H T   
Sbjct: 333 MAPRSSYGSGWEQRPHQSLQGPPSHNWGYDHYGGQRGHSSEVSSSAPHPSSIPQHCTGPY 392

Query: 58  -----GPSPAQVNYNYGQPQGQEYGHQAPYAQAGHPPQGYAQGYGESKYENHPPTQHPYG 112
                GPSP Q+NYN                                 YEN  P Q+PYG
Sbjct: 393 PLPSIGPSPVQMNYN---------------------------------YENLAPAQYPYG 419

Query: 113 GHINPQPSYPQAG--PNYAAPQQYGKPPVYGQ-PSHGQAPQSYGHPRATQPGDIPYQGST 169
            H     +YPQA    N+A PQQYGKPP+YG  PS GQ PQ+Y HPRATQPG+IPYQGST
Sbjct: 420 RH----STYPQAWAQANHAPPQQYGKPPLYGVPPSQGQHPQAYVHPRATQPGEIPYQGST 475

Query: 170 PAQSYG 175
           PAQSYG
Sbjct: 476 PAQSYG 481


>Medtr7g010340.2 | KH domain protein, putative | HC |
           chr7:2526463-2517960 | 20130731
          Length = 544

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 103/186 (55%), Gaps = 48/186 (25%)

Query: 1   MAPRSSYGSGWEQRPHHSLQGPPSHXXXXXXXXXXXXHLSDAPPSTQLPSSVPPHGT--- 57
           MAPRSSYGSGWEQRPH SLQGPPSH            H S+   S   PSS+P H T   
Sbjct: 317 MAPRSSYGSGWEQRPHQSLQGPPSHNWGYDHYGGQRGHSSEVSSSAPHPSSIPQHCTGPY 376

Query: 58  -----GPSPAQVNYNYGQPQGQEYGHQAPYAQAGHPPQGYAQGYGESKYENHPPTQHPYG 112
                GPSP Q+NYN                                 YEN  P Q+PYG
Sbjct: 377 PLPSIGPSPVQMNYN---------------------------------YENLAPAQYPYG 403

Query: 113 GHINPQPSYPQAG--PNYAAPQQYGKPPVYGQ-PSHGQAPQSYGHPRATQPGDIPYQGST 169
            H     +YPQA    N+A PQQYGKPP+YG  PS GQ PQ+Y HPRATQPG+IPYQGST
Sbjct: 404 RH----STYPQAWAQANHAPPQQYGKPPLYGVPPSQGQHPQAYVHPRATQPGEIPYQGST 459

Query: 170 PAQSYG 175
           PAQSYG
Sbjct: 460 PAQSYG 465