Miyakogusa Predicted Gene

Lj2g3v2099820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2099820.1 Non Characterized Hit- tr|C6TEP8|C6TEP8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32168
PE,85.99,0,PORPHBDMNASE,Tetrapyrrole biosynthesis, hydroxymethylbilane
synthase; SUBFAMILY NOT NAMED,NULL; PORP,CUFF.38566.1
         (344 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g076600.1 | porphobilinogen deaminase | HC | chr4:29299820...   579   e-165

>Medtr4g076600.1 | porphobilinogen deaminase | HC |
           chr4:29299820-29303409 | 20130731
          Length = 369

 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/349 (81%), Positives = 316/349 (90%), Gaps = 7/349 (2%)

Query: 3   SLSPITLHAPFSTR----YGRVSVKASIAVEQPT---KLALIKIGTRGSPLALAQAYETR 55
           SL  ++   PF++     + +  ++AS+AVEQ T   K A+I+IGTRGSPLALAQA+ETR
Sbjct: 21  SLFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETR 80

Query: 56  DKLIASHSELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALLNGEIDIAVH 115
           DKLIASH+ELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEAL+NG+IDIAVH
Sbjct: 81  DKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVH 140

Query: 116 SMKDVPTYLPDKTILPCNLPREDVRDAFIXXXXXXXXXXPAGSVIGTASLRRKSQILHRY 175
           SMKDVPTYLP+KTILPCNLPREDVRDAFI          PAGSVIGTASLRRKSQILHRY
Sbjct: 141 SMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRY 200

Query: 176 PSLNVQDNFRGNVQTRLKKLNEGVVKATLLALAGLKRLNMTENVTSTLSIEEKLPAVAQG 235
           PSL+VQDNFRGNVQTRL+KL+EGVVKATLLALAGLKRLNMTENVTSTLSI++ LPAVAQG
Sbjct: 201 PSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQG 260

Query: 236 AIGIACRSDDDKMAEYIASLNHEETRLAVVCERAFLLTLDGSCRTPIAGYASRNEDGNCL 295
           AIGIACRS+DDKMAEY+ASLNHEETRLA+ CERAFL TLDGSCRTPIAGYASR++DGNCL
Sbjct: 261 AIGIACRSNDDKMAEYLASLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCL 320

Query: 296 FRGLVASPDGTRVLETSRVGPYAVEDMIEMGKDAGKELLSRAGPNFFSS 344
           FRGLVASPDGTRVLETSR+GPYA EDM++MG+DAG+ELLSRAGP FF+S
Sbjct: 321 FRGLVASPDGTRVLETSRIGPYAYEDMMKMGRDAGEELLSRAGPGFFNS 369