Miyakogusa Predicted Gene

Lj2g3v2089770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2089770.1 Non Characterized Hit- tr|H9IKH3|H9IKH3_ATTCE
Uncharacterized protein OS=Atta cephalotes PE=4
SV=1,33.7,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; THUMP DOMAIN
CONTAINING PROTEIN 1-RELATED,NULL; THUMP,THUMP; THU,CUFF.38558.1
         (456 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g009010.1 | THUMP domain protein | HC | chr5:2047761-20525...   388   e-108

>Medtr5g009010.1 | THUMP domain protein | HC | chr5:2047761-2052587
           | 20130731
          Length = 378

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/267 (73%), Positives = 222/267 (83%), Gaps = 4/267 (1%)

Query: 193 EGDEANGDKMPKMDSSVNENAGHDNEIGGKENPHKIDDVHAAAGNKTDDNEGDNDNIKT- 251
           EG E   DK PK+D S ++N  HDNE G K +P KID +HA AG+K +D++GD D+ KT 
Sbjct: 109 EGGEEKEDKKPKLDVSNSDNTSHDNETGEKSDPPKIDGLHAQAGDKANDDKGDVDSPKTI 168

Query: 252 -KTANELPVVKQCCKTNVPVQDSSNKV--EKSIDTLIDEELRELGDKKKRRFVKLESGCN 308
            K A+ELP VK+CCKT  P  +   K   EKSID LI++EL EL DK K+RF KLESGCN
Sbjct: 169 EKIADELPAVKECCKTTAPTSNLGEKKVEEKSIDKLIEDELVELRDKSKKRFAKLESGCN 228

Query: 309 GVVFIQMRKKDGDKSPKDIVHRIVTSAASTRKHMSRFILRMLPIEVSCYASKEEISRAIK 368
           GVVFIQMRKKDGDKSP  IV+RIVTSAASTRKHMSRFILR+LPIEVSCYASKEEIS+AI+
Sbjct: 229 GVVFIQMRKKDGDKSPNKIVNRIVTSAASTRKHMSRFILRILPIEVSCYASKEEISKAIQ 288

Query: 369 PLVEQNFPVPTQKPLKFAVMYEARANTGIDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVE 428
           PLVEQ FPV TQ P KFAVMYEARANTG+DRMEIIDAVAKS+P PHKVDL NPDKTI+VE
Sbjct: 289 PLVEQYFPVETQNPQKFAVMYEARANTGVDRMEIIDAVAKSIPAPHKVDLSNPDKTIIVE 348

Query: 429 IARTVCLIGIIEKYKELSKYNLRELTS 455
           IARTVCLIG++EKYKELSKYN+R+LTS
Sbjct: 349 IARTVCLIGVVEKYKELSKYNIRQLTS 375



 Score =  132 bits (332), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 66/72 (91%)

Query: 20 YLPHNKPVKKGSYPLHPGVQGVFITCEGGREHQASREALNILESFYEDLVDGEHLSVKEL 79
          YLPHNKPVKKGSYPLHPGVQG FITC+GGREHQA+REALNIL++FYE+L+DG H SV +L
Sbjct: 17 YLPHNKPVKKGSYPLHPGVQGFFITCDGGREHQATREALNILDNFYEELIDGAHPSVTKL 76

Query: 80 LNRPKNKKITFA 91
           ++P NKKITFA
Sbjct: 77 SDKPLNKKITFA 88