Miyakogusa Predicted Gene

Lj2g3v2088070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2088070.1 Non Characterized Hit- tr|I3S704|I3S704_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; no
description,WD40/YVTN repeat-li,CUFF.38545.1
         (326 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g072020.1 | nucleoporin seh1-like protein | HC | chr6:2669...   543   e-155
Medtr3g054090.1 | transducin/WD-like repeat-protein | HC | chr3:...    70   2e-12

>Medtr6g072020.1 | nucleoporin seh1-like protein | HC |
           chr6:26695311-26691594 | 20130731
          Length = 328

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/328 (80%), Positives = 280/328 (85%), Gaps = 2/328 (0%)

Query: 1   MAKEVLTLDNGTTCSSWNYSGTRLAAGSADGTLSIXXXXX--XXXXXXXXXXXXXXVHEG 58
           MAKE+L+LDNGTTCSSWNYS TRLA GS D T  I                     VHEG
Sbjct: 1   MAKELLSLDNGTTCSSWNYSSTRLATGSTDATFQIFDFKDPPSSSSNSLRSSFKSKVHEG 60

Query: 59  NIVNIVWVPPAYGDAVACISVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGI 118
           NIV IVW PP YGDAVAC+S DGIVSLLEE+VEDSQPLQWK+ K  GSS+ KVLDVQFGI
Sbjct: 61  NIVKIVWFPPEYGDAVACVSADGIVSLLEEIVEDSQPLQWKVRKTLGSSASKVLDVQFGI 120

Query: 119 SLASLKMVAAYSDGHMKVFELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNP 178
           S   LKMVAAYSDGHM+VFELLDPLEL NWQLQAEFQNVIESVSSFGKA+CLSASI+ NP
Sbjct: 121 SSTRLKMVAAYSDGHMRVFELLDPLELTNWQLQAEFQNVIESVSSFGKALCLSASITLNP 180

Query: 179 QNGGSQESSFLVGFNSNTSELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPN 238
           Q GGSQES FLVGFNSNT ELNS+KVWEFDQAHQRWLPVAEL++PEDKGDQVYAVAWAPN
Sbjct: 181 QKGGSQESCFLVGFNSNTPELNSSKVWEFDQAHQRWLPVAELSLPEDKGDQVYAVAWAPN 240

Query: 239 IGRTYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVAVLSGHDGMVWQMEWDMSGMTLAT 298
           IGR YEIIAVATHKG+ IW LGLNPDH+GRLPV+RVAVLSGH+G VWQMEWDMSGMTLAT
Sbjct: 241 IGRPYEIIAVATHKGIGIWQLGLNPDHNGRLPVDRVAVLSGHEGAVWQMEWDMSGMTLAT 300

Query: 299 TGQDGMVRLWQSNLNGVWHQQAAFEPTS 326
           TG DGMVRLWQSNLNGVWHQQAAFEPTS
Sbjct: 301 TGNDGMVRLWQSNLNGVWHQQAAFEPTS 328


>Medtr3g054090.1 | transducin/WD-like repeat-protein | HC |
           chr3:21448066-21445525 | 20130731
          Length = 301

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 121/309 (39%), Gaps = 29/309 (9%)

Query: 18  NYSGTRLAAGSADGTLSIXXXXXXXXXXXXXXXXXXXVHEGNIVNIVWVPPAYGDAVACI 77
           +Y G RLA  S+D T+ I                    H+G +  + W  P +G  +A  
Sbjct: 20  DYYGKRLATASSDHTIKIIGVSNSASQHLATLTG----HQGPVWEVAWAHPKFGSLLASC 75

Query: 78  SVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISLASLKMVAAYSDGHMKVF 137
           S DG V L +E  ++    +W     F      V  V +      L +  A SDG++ VF
Sbjct: 76  SYDGRVILWKEGNQN----EWIQAHVFDEHKSSVNSVAWAPHELGLCLACASSDGNISVF 131

Query: 138 ELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQNGGSQESSFLVGFNSNTS 197
                      ++       + SVS +  ++   A +       GS     +    S   
Sbjct: 132 TARADGGWDTSRIDQAHPVGVTSVS-WAPSMAPGALV-------GSGLLDPVQKLCSGGC 183

Query: 198 ELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIGRTYEIIAVATHKG-LAI 256
           + N+ KVW+      +      L   +   D V  VAWAPN+G     IA A+  G + I
Sbjct: 184 D-NTVKVWKLSNGQWKMDCFPAL---QKHNDWVRDVAWAPNLGLPKSTIASASQDGKVII 239

Query: 257 WHLGLNPDH-DGRLPVERVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGV 315
           W  G   DH +G+        L+     VW++ W ++G  LA    +  V LW+  ++G 
Sbjct: 240 WTAGKEGDHWEGK-------DLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGE 292

Query: 316 WHQQAAFEP 324
           W Q    EP
Sbjct: 293 WQQVTTVEP 301