Miyakogusa Predicted Gene

Lj2g3v2087820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2087820.1 tr|A8ITW6|A8ITW6_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_189570 PE=4
SV=1,35.16,0.000000006, ,CUFF.38515.1
         (146 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g068660.1 | hypothetical protein | HC | chr5:29080068-2908...   236   6e-63
Medtr3g093320.1 | hypothetical protein | HC | chr3:42648775-4264...   170   5e-43

>Medtr5g068660.1 | hypothetical protein | HC |
           chr5:29080068-29083036 | 20130731
          Length = 147

 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 124/145 (85%), Gaps = 1/145 (0%)

Query: 1   MEVLGKSMVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICDK 60
           MEV GKSMVA P+NVI+LSSILG DGP PVHKCDWKCQNE V GNM+RCKLTGLTHICDK
Sbjct: 1   MEVYGKSMVAAPSNVIYLSSILGHDGPSPVHKCDWKCQNESVWGNMFRCKLTGLTHICDK 60

Query: 61  NCDQRILYDNHSSLCRASGQVFSLTPTEEQAIRGVRRKLDANNSQTAD-SCGFKRRREAQ 119
           NC+QRILYDNHSSLC AS Q+F LTPTEEQA+RGVRRKLDA  S   D + G KRRR+AQ
Sbjct: 61  NCNQRILYDNHSSLCLASRQIFPLTPTEEQAVRGVRRKLDAAESSHVDNNGGCKRRRDAQ 120

Query: 120 LHPSHFEKSFSVVNPICSQVADGMD 144
            HPS FE+SF+ V+PICSQV DGMD
Sbjct: 121 FHPSPFERSFTAVSPICSQVGDGMD 145


>Medtr3g093320.1 | hypothetical protein | HC |
           chr3:42648775-42649216 | 20130731
          Length = 119

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 99/146 (67%), Gaps = 27/146 (18%)

Query: 1   MEVLGKSMVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICDK 60
           MEV GKS+ A PAN I+LSSIL      P   C        V GNMYRCKLTGLTHICDK
Sbjct: 1   MEVYGKSVAAAPANAIYLSSIL-----VPKRTC-------FVFGNMYRCKLTGLTHICDK 48

Query: 61  NCDQRILYDNHSSLCRASGQVFSLTPTEEQAIRGVRRKLDANNSQTADSCGFKRRREAQL 120
           NC+QRILYDNHSSLCRASGQ+F LTPTEEQA+RGV   L                R+ Q 
Sbjct: 49  NCNQRILYDNHSSLCRASGQIFPLTPTEEQAVRGVLGSLI---------------RDTQR 93

Query: 121 HPSHFEKSFSVVNPICSQVADGMDMS 146
           HPS FEKSFS V+PICSQV DGMDMS
Sbjct: 94  HPSPFEKSFSAVSPICSQVGDGMDMS 119