Miyakogusa Predicted Gene

Lj2g3v2087670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2087670.1 tr|G7LDT6|G7LDT6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g062030 PE=4
SV=1,29.27,0.0000006, ,CUFF.38504.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g062030.1 | replication factor-A carboxy-terminal domain p...    60   1e-09
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p...    54   4e-08
Medtr0042s0170.1 | replication factor-A carboxy-terminal domain ...    54   7e-08
Medtr4g040040.1 | replication factor-A carboxy-terminal domain p...    47   9e-06

>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:25901653-25904109 | 20130731
          Length = 575

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 1   MVKMMHRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEK 60
           +++M+ RY++ + V DG   SVF+L D +  ++++K C      S       +PPE+   
Sbjct: 331 VIQMVPRYKIKLRVDDGTGDSVFVLFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEI-VM 389

Query: 61  LVGAEVLFKVRNDV--RRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVT 118
           L G   LFKV   V     +DG   Y V  +C+DS  + KF+    + T  ES    ++ 
Sbjct: 390 LKGKRFLFKVDKPVISGGFFDG--SYRVKRVCADSSIVAKFAMNGYNYTPTESIRKGKMV 447

Query: 119 YLE 121
           + E
Sbjct: 448 FDE 450


>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr5:33436158-33438920 | 20130731
          Length = 517

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 3   KMMHRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLV 62
           +M+ R+R+ V+VSD     VF++ D +  +++   C      +    A H+PPE  EKL 
Sbjct: 332 QMVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEF-EKLK 390

Query: 63  GAEVLFKVRNDVRR--LYDGCFCYDVLHICSDSETMDKF 99
           G ++LFKV         +DG F   V  +C D   +  F
Sbjct: 391 GKKMLFKVEKCTSSSIFFDGSF--RVKRVCDDPAIIQSF 427


>Medtr0042s0170.1 | replication factor-A carboxy-terminal domain
           protein | LC | scaffold0042:77181-79334 | 20130731
          Length = 400

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 3   KMMHRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLV 62
           +M+ RY++ + V DG    VF++ D +  +++ K C +   A+       +P E   KL 
Sbjct: 164 QMVPRYKVKIRVDDGDGCVVFVVFDGDMHNLLGKQCSDLVSAAKAENVGFYPDE-HLKLK 222

Query: 63  GAEVLFKVRND--VRRLYDGCFCYDVLHICSDSETMDKFSAKRT 104
           G  +LFKV        L+DG   Y V  ICSD+  ++ F+A+ T
Sbjct: 223 GMYLLFKVEKSSVASVLFDG--SYRVRRICSDAAVIESFTAQAT 264


>Medtr4g040040.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr4:14260390-14261092 | 20130731
          Length = 168

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 51/116 (43%)

Query: 7   RYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLVGAEV 66
           R+R+  HV+D   S+ F++ D  A       C +          + + P+    +VG   
Sbjct: 50  RFRITFHVTDNTGSATFLMHDSVAAEFFGIPCSKMLEFGENVGMSSYVPDELLNMVGKCY 109

Query: 67  LFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEE 122
           LFKV + V    DG  CY +  I  D E + +F    + V  +++ S S+   + E
Sbjct: 110 LFKVFSKVGAGCDGEKCYPISKINDDEELLGRFKRHNSVVIKLDTPSVSKYMSILE 165