Miyakogusa Predicted Gene

Lj2g3v2051030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2051030.1 tr|B9GKD9|B9GKD9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_815072 PE=4 SV=1,61.9,2e-19,
,CUFF.38467.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g015390.1 | SPIRAL protein, putative | HC | chr6:5047544-5...    64   3e-11
Medtr6g015390.2 | SPIRAL protein, putative | HC | chr6:5047910-5...    64   3e-11
Medtr5g045310.2 | hypothetical protein | HC | chr5:19886447-1988...    55   2e-08
Medtr5g045310.1 | hypothetical protein | HC | chr5:19885802-1988...    55   2e-08

>Medtr6g015390.1 | SPIRAL protein, putative | HC |
           chr6:5047544-5051254 | 20130731
          Length = 139

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 58/133 (43%), Gaps = 37/133 (27%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTAPLPPYGIDIDNN--------------- 45
           M RG + GGGQSSLGYLF + E  +  Q   T   P  G    N                
Sbjct: 1   MGRGVSCGGGQSSLGYLFGTGETTNNVQRANTQGEPLNGGRTQNASVASPASVASPASVA 60

Query: 46  ------------------SP--DAGAPPNTKVAVSNN--RSQGPNLGNFVTDRPSTKVKS 83
                             SP  D   P      + NN  R+ G N GNF+TDRPSTKV +
Sbjct: 61  SPAAVASPAKVASPARVASPPIDKETPAGIPGCLKNNYHRADGQNCGNFLTDRPSTKVHA 120

Query: 84  VPGGHSSLGYLFG 96
            PGG SSLGYLFG
Sbjct: 121 APGGGSSLGYLFG 133


>Medtr6g015390.2 | SPIRAL protein, putative | HC |
           chr6:5047910-5051254 | 20130731
          Length = 139

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 58/133 (43%), Gaps = 37/133 (27%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTAPLPPYGIDIDNN--------------- 45
           M RG + GGGQSSLGYLF + E  +  Q   T   P  G    N                
Sbjct: 1   MGRGVSCGGGQSSLGYLFGTGETTNNVQRANTQGEPLNGGRTQNASVASPASVASPASVA 60

Query: 46  ------------------SP--DAGAPPNTKVAVSNN--RSQGPNLGNFVTDRPSTKVKS 83
                             SP  D   P      + NN  R+ G N GNF+TDRPSTKV +
Sbjct: 61  SPAAVASPAKVASPARVASPPIDKETPAGIPGCLKNNYHRADGQNCGNFLTDRPSTKVHA 120

Query: 84  VPGGHSSLGYLFG 96
            PGG SSLGYLFG
Sbjct: 121 APGGGSSLGYLFG 133


>Medtr5g045310.2 | hypothetical protein | HC |
          chr5:19886447-19883385 | 20130731
          Length = 104

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query: 53 PNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
          P+    +++N   G N GNF+TDRPSTKV + PGG SSLGYLFG
Sbjct: 55 PSKPAGINSNSIDGLNTGNFITDRPSTKVHAAPGGGSSLGYLFG 98


>Medtr5g045310.1 | hypothetical protein | HC |
           chr5:19885802-19883713 | 20130731
          Length = 122

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query: 53  PNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
           P+    +++N   G N GNF+TDRPSTKV + PGG SSLGYLFG
Sbjct: 73  PSKPAGINSNSIDGLNTGNFITDRPSTKVHAAPGGGSSLGYLFG 116