Miyakogusa Predicted Gene

Lj2g3v2051010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2051010.1 Non Characterized Hit- tr|G7KC08|G7KC08_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,54.12,0.000000000000009,seg,NULL,CUFF.38465.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g010040.3 | hypothetical protein | HC | chr5:2611431-26118...    54   3e-08
Medtr5g010040.1 | hypothetical protein | HC | chr5:2611431-26118...    54   3e-08
Medtr5g010040.2 | hypothetical protein | HC | chr5:2611431-26118...    54   3e-08

>Medtr5g010040.3 | hypothetical protein | HC | chr5:2611431-2611892
           | 20130731
          Length = 88

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 69  RQLVAI----AKHRFKHTYPMKGSQGILVTSKPKKQDN----------NDPIVSFSRXXX 114
           R LVA     AK+RFK  Y + GSQGIL   K +K ++          NDPIV+ SR   
Sbjct: 2   RGLVAFLLLRAKNRFKPVYQVNGSQGILAPKKQEKDESGEMGLATKEMNDPIVAHSRPPP 61

Query: 115 XXXXXXXXXXXSLLETWWNSGSDDD 139
                      SLL+TWWN  +D+D
Sbjct: 62  LPPVIGSLVALSLLDTWWNRSTDED 86


>Medtr5g010040.1 | hypothetical protein | HC | chr5:2611431-2611892
           | 20130731
          Length = 88

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 69  RQLVAI----AKHRFKHTYPMKGSQGILVTSKPKKQDN----------NDPIVSFSRXXX 114
           R LVA     AK+RFK  Y + GSQGIL   K +K ++          NDPIV+ SR   
Sbjct: 2   RGLVAFLLLRAKNRFKPVYQVNGSQGILAPKKQEKDESGEMGLATKEMNDPIVAHSRPPP 61

Query: 115 XXXXXXXXXXXSLLETWWNSGSDDD 139
                      SLL+TWWN  +D+D
Sbjct: 62  LPPVIGSLVALSLLDTWWNRSTDED 86


>Medtr5g010040.2 | hypothetical protein | HC | chr5:2611431-2611892
           | 20130731
          Length = 88

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 69  RQLVAI----AKHRFKHTYPMKGSQGILVTSKPKKQDN----------NDPIVSFSRXXX 114
           R LVA     AK+RFK  Y + GSQGIL   K +K ++          NDPIV+ SR   
Sbjct: 2   RGLVAFLLLRAKNRFKPVYQVNGSQGILAPKKQEKDESGEMGLATKEMNDPIVAHSRPPP 61

Query: 115 XXXXXXXXXXXSLLETWWNSGSDDD 139
                      SLL+TWWN  +D+D
Sbjct: 62  LPPVIGSLVALSLLDTWWNRSTDED 86