Miyakogusa Predicted Gene
- Lj2g3v2017700.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2017700.2 Non Characterized Hit- tr|I3SEL6|I3SEL6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,82,2e-18,BAH,Bromo adjacent homology (BAH) domain;
TFIIS_CENTRAL,Transcription elongation factor S-II,
centra,CUFF.38450.2
(385 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g010190.1 | bromo-adjacent-like (BAH) domain protein | HC ... 654 0.0
Medtr5g010190.2 | bromo-adjacent-like (BAH) domain protein | HC ... 527 e-150
Medtr8g098290.1 | bromo-adjacent-like (BAH) domain protein | HC ... 506 e-143
Medtr8g098260.1 | transcription factor S-II, central domain prot... 494 e-140
Medtr8g098290.2 | bromo-adjacent-like (BAH) domain protein | HC ... 356 2e-98
Medtr6g464540.1 | bromo-adjacent-like (BAH) domain protein | HC ... 228 6e-60
Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain p... 72 1e-12
Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain p... 72 1e-12
>Medtr5g010190.1 | bromo-adjacent-like (BAH) domain protein | HC |
chr5:2667413-2662178 | 20130731
Length = 596
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/386 (79%), Positives = 350/386 (90%), Gaps = 1/386 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
MV GQWFYRPEEAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVVHF+PL+KQ PK
Sbjct: 134 MVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPK 193
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQ+VYDT+ERKLW LTDKDYED+ QQEIDELV+KT++RIG+ LD+EPE+AP
Sbjct: 194 RKQHPGFIVQRVYDTLERKLWKLTDKDYEDVNQQEIDELVQKTIKRIGDLLDIEPEEAPP 253
Query: 121 D-QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFN 179
QED+ KNKRSLRRKS+SP DVS+EEEGV KSDQH KPETPGSC+NN SEH+RILV+FN
Sbjct: 254 AVQEDMTKNKRSLRRKSISPIDVSREEEGVSKSDQHSKPETPGSCVNNDSEHHRILVNFN 313
Query: 180 ALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQD 239
ALTG++ RDKWLER LQH+QYMC+SDDSTE++ N DEIK+++++ +SEIAND Q+
Sbjct: 314 ALTGNIHRDKWLERLLQHIQYMCNSDDSTEKEKGSGNAESDEIKNKSNDRTSEIANDSQN 373
Query: 240 KGQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLN 299
KGQKSS+ F WPDAAVSAIVALEKASH+AFS+DFQKYNQKLRQL FNLKNNA LARRLLN
Sbjct: 374 KGQKSSESFVWPDAAVSAIVALEKASHEAFSTDFQKYNQKLRQLDFNLKNNALLARRLLN 433
Query: 300 GELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAG 359
GEL+PSKILNMT ELKEGLTAEEKTKKEPDE +HMQMTDARCSRC + KVGLR+IIHAG
Sbjct: 434 GELKPSKILNMTPIELKEGLTAEEKTKKEPDEKQHMQMTDARCSRCTDSKVGLREIIHAG 493
Query: 360 HNDRYQLECVSCGNSWYASRDEVSSL 385
H+DRYQLECV+CGNSWYASR+EVS+L
Sbjct: 494 HDDRYQLECVACGNSWYASRNEVSAL 519
>Medtr5g010190.2 | bromo-adjacent-like (BAH) domain protein | HC |
chr5:2667413-2662178 | 20130731
Length = 462
Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/326 (76%), Positives = 289/326 (88%), Gaps = 1/326 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
MV GQWFYRPEEAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVVHF+PL+KQ PK
Sbjct: 134 MVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPK 193
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQ+VYDT+ERKLW LTDKDYED+ QQEIDELV+KT++RIG+ LD+EPE+AP
Sbjct: 194 RKQHPGFIVQRVYDTLERKLWKLTDKDYEDVNQQEIDELVQKTIKRIGDLLDIEPEEAPP 253
Query: 121 D-QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFN 179
QED+ KNKRSLRRKS+SP DVS+EEEGV KSDQH KPETPGSC+NN SEH+RILV+FN
Sbjct: 254 AVQEDMTKNKRSLRRKSISPIDVSREEEGVSKSDQHSKPETPGSCVNNDSEHHRILVNFN 313
Query: 180 ALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQD 239
ALTG++ RDKWLER LQH+QYMC+SDDSTE++ N DEIK+++++ +SEIAND Q+
Sbjct: 314 ALTGNIHRDKWLERLLQHIQYMCNSDDSTEKEKGSGNAESDEIKNKSNDRTSEIANDSQN 373
Query: 240 KGQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLN 299
KGQKSS+ F WPDAAVSAIVALEKASH+AFS+DFQKYNQKLRQL FNLKNNA LARRLLN
Sbjct: 374 KGQKSSESFVWPDAAVSAIVALEKASHEAFSTDFQKYNQKLRQLDFNLKNNALLARRLLN 433
Query: 300 GELEPSKILNMTYSELKEGLTAEEKT 325
GEL+PSKILNMT ELK+G+ A K
Sbjct: 434 GELKPSKILNMTPIELKQGMHALHKA 459
>Medtr8g098290.1 | bromo-adjacent-like (BAH) domain protein | HC |
chr8:40943275-40948326 | 20130731
Length = 579
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/385 (64%), Positives = 302/385 (78%), Gaps = 2/385 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
M+TGQWFYRP+EAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVVHF+P+HKQLP
Sbjct: 139 MITGQWFYRPDEAEKKGGGSWQSVDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 198
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK HPGF+VQKVYDT E KLW LTDKDY+D QQEIDELV+KT +R+GE D++ ++A
Sbjct: 199 RKVHPGFIVQKVYDTDELKLWKLTDKDYQDNNQQEIDELVQKTRQRLGELPDIKTDEAAA 258
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
DQEDL++N+R+ + K +S DVS+E+E KS KP TPGSC +E RILV+FNA
Sbjct: 259 DQEDLIRNRRNFK-KGISAIDVSREDETSRKSLHSLKPGTPGSCPVITTEPQRILVNFNA 317
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK L LQ++QY+ +D+S +++NK + D I ++ ++ S IAN+ +DK
Sbjct: 318 LTGDSHRDKGLAMLLQNVQYLFDTDESKKKENKCGD-RSDAINNEGNDKSVGIANESKDK 376
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNG 300
K+ K F WPD AV A+VALEKA + FSSD+QKY QKLRQL FNLKNNAFL RRLLNG
Sbjct: 377 VPKNCKSFVWPDVAVPAVVALEKALYHTFSSDYQKYTQKLRQLVFNLKNNAFLLRRLLNG 436
Query: 301 ELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGH 360
ELEPSKILNMT +ELKEGLTAEE +K EPDE +HMQMTDARC C E KVG+RDII AG+
Sbjct: 437 ELEPSKILNMTPTELKEGLTAEEISKDEPDEPQHMQMTDARCKICDEQKVGVRDIIRAGY 496
Query: 361 NDRYQLECVSCGNSWYASRDEVSSL 385
DRY LEC++CG+SW ASRD VS L
Sbjct: 497 ADRYMLECIACGHSWSASRDAVSVL 521
>Medtr8g098260.1 | transcription factor S-II, central domain protein
| LC | chr8:40956492-40966975 | 20130731
Length = 1301
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/385 (65%), Positives = 303/385 (78%), Gaps = 1/385 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
M+TGQWFYRP EAEKKGGG+W S +TREL+YSFH D +PAESV H CVVHF+P+HKQLP
Sbjct: 115 MITGQWFYRPYEAEKKGGGTWQSNETRELYYSFHQDAVPAESVKHTCVVHFVPIHKQLPN 174
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGFVVQKVYD KLW LTDKDY+D KQ+EIDELV KT++R+GE D+E ++ P
Sbjct: 175 RKQHPGFVVQKVYDIETMKLWNLTDKDYKDDKQKEIDELVLKTIQRLGELPDIETDETPA 234
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
QEDL+KNKR ++KS+S D+SKE+E KS Q +PE PG + N SEHYR+LV FNA
Sbjct: 235 GQEDLMKNKRDFKKKSISSLDLSKEKEASRKSVQSLEPEIPGKRVANTSEHYRVLVKFNA 294
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK LE LQ++QY+ +DD+ ++ +KGS+ N D I + ++ S EIAN+C+ K
Sbjct: 295 LTGDAHRDKCLETLLQNVQYLFDTDDNMKKKDKGSD-NSDAINNGGNSKSLEIANECKGK 353
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNG 300
K+SKPF WPD AV A+VA+EKASHDAFSSD QKY QKLRQL FNLKNNAFL RRLLNG
Sbjct: 354 VLKNSKPFVWPDVAVPAVVAVEKASHDAFSSDDQKYRQKLRQLAFNLKNNAFLLRRLLNG 413
Query: 301 ELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGH 360
ELEPS+ILNMT +ELKEGLTAEE K EPDE +HMQMTDA C C E KVG+RDII AG
Sbjct: 414 ELEPSQILNMTPTELKEGLTAEELPKNEPDEQQHMQMTDASCKLCTERKVGVRDIIRAGL 473
Query: 361 NDRYQLECVSCGNSWYASRDEVSSL 385
DRY LEC++CG+SW AS D VS L
Sbjct: 474 ADRYMLECIACGHSWSASCDAVSVL 498
>Medtr8g098290.2 | bromo-adjacent-like (BAH) domain protein | HC |
chr8:40943322-40947559 | 20130731
Length = 447
Score = 356 bits (914), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/299 (59%), Positives = 226/299 (75%), Gaps = 2/299 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
M+TGQWFYRP+EAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVVHF+P+HKQLP
Sbjct: 139 MITGQWFYRPDEAEKKGGGSWQSVDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 198
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK HPGF+VQKVYDT E KLW LTDKDY+D QQEIDELV+KT +R+GE D++ ++A
Sbjct: 199 RKVHPGFIVQKVYDTDELKLWKLTDKDYQDNNQQEIDELVQKTRQRLGELPDIKTDEAAA 258
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
DQEDL++N+R+ +K +S DVS+E+E KS KP TPGSC +E RILV+FNA
Sbjct: 259 DQEDLIRNRRNF-KKGISAIDVSREDETSRKSLHSLKPGTPGSCPVITTEPQRILVNFNA 317
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK L LQ++QY+ +D+S +++NK + D I ++ ++ S IAN+ +DK
Sbjct: 318 LTGDSHRDKGLAMLLQNVQYLFDTDESKKKENKCGD-RSDAINNEGNDKSVGIANESKDK 376
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLN 299
K+ K F WPD AV A+VALEKA + FSSD+QKY QKLRQL FNLK ++ + ++N
Sbjct: 377 VPKNCKSFVWPDVAVPAVVALEKALYHTFSSDYQKYTQKLRQLVFNLKVGSYFSIWIIN 435
>Medtr6g464540.1 | bromo-adjacent-like (BAH) domain protein | HC |
chr6:22509641-22507190 | 20130731
Length = 360
Score = 228 bits (582), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 165/287 (57%), Gaps = 72/287 (25%)
Query: 2 VTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKR 61
+T FYRP+EAE++ G +W S+ RELFYSFH +PAE+VMH C VHFIP+HK+LP
Sbjct: 112 ITTHLFYRPDEAERRRGHTWKSKIKRELFYSFHQYVVPAENVMHTCAVHFIPVHKKLPTS 171
Query: 62 KEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDD 121
KE PGF+VQKVY+T E+KL LTDK Y+D +QQE+D LV+KT++R+GE
Sbjct: 172 KEVPGFIVQKVYNTKEKKLRNLTDKVYDDNQQQEMDNLVQKTIQRLGE------------ 219
Query: 122 QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNAL 181
D++ +K+ L +KS+SP HY ILV FNAL
Sbjct: 220 LPDIIVDKKDLTKKSISP-------------------------------HYDILVKFNAL 248
Query: 182 TGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKG 241
TG+ RD+ L LQ++QY+ SDD N D I + N
Sbjct: 249 TGETSRDEHLVMLLQNVQYLFDSDD-----------NSDAISNGN--------------- 282
Query: 242 QKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLK 288
SK F WPD AV A+VALEKASHD FS ++Q Y++K++ L FNLK
Sbjct: 283 ---SKSFVWPDVAVQAVVALEKASHDTFSPNYQNYSEKIQNLAFNLK 326
>Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain
protein, putative | HC | chr6:1984298-1978119 | 20130731
Length = 1589
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 6 WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
WFYRP + K G + E+FYSFH D+ A S++H C V F+ +LP
Sbjct: 81 WFYRPADL-KLSKGIAVEAAPNEVFYSFHKDETHAASLLHPCKVAFLRKGVELPSGIS-- 137
Query: 66 GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKT 103
FV ++VYD L LTDKD+ + +Q+E+D L+ KT
Sbjct: 138 AFVCRRVYDIDNNCLRWLTDKDFVNDQQEEVDHLLDKT 175
>Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain
protein, putative | HC | chr6:1984298-1978119 | 20130731
Length = 1589
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 6 WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
WFYRP + K G + E+FYSFH D+ A S++H C V F+ +LP
Sbjct: 81 WFYRPADL-KLSKGIAVEAAPNEVFYSFHKDETHAASLLHPCKVAFLRKGVELPSGIS-- 137
Query: 66 GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKT 103
FV ++VYD L LTDKD+ + +Q+E+D L+ KT
Sbjct: 138 AFVCRRVYDIDNNCLRWLTDKDFVNDQQEEVDHLLDKT 175