Miyakogusa Predicted Gene

Lj2g3v2017430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2017430.1 Non Characterized Hit- tr|F6HUG0|F6HUG0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,46.58,0.000004,
,CUFF.38424.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g010650.1 | myb transcription factor | HC | chr5:2899487-2...   121   4e-28

>Medtr5g010650.1 | myb transcription factor | HC |
           chr5:2899487-2902910 | 20130731
          Length = 476

 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 108/206 (52%), Gaps = 47/206 (22%)

Query: 13  VSLNQSHWLAHSIDNSSTKLTLQSTSGVEFSSPKSYFNGETPKASRQGESRLINLP---- 68
           VS  QS+WL  + DN  T++ +Q+ S  EF S  + F   T +AS + E R +NLP    
Sbjct: 250 VSPKQSNWLNQNADNFPTRMAIQNASVEEFWSDINIFGVATRRASEKSERRSVNLPNLME 309

Query: 69  -------------TDLSLNNFPDMLATNLFCSPLATTVHYEAYESPKRQKVYSSDAEFTV 115
                         D  +N+  DMLATN+ C P ++TV YEAY SPK QK   S+++F  
Sbjct: 310 TAISCKDHANLTFADKHMNSSMDMLATNMDCFPSSSTVTYEAYNSPKWQKASFSESKFIA 369

Query: 116 VDESDS--------PQCEKKDQVGSESHSKISSMQDTGCSYVTPKSKFSNYMGSVSPESV 167
            +ESDS           EKK QVG ES++K                        +SPESV
Sbjct: 370 GNESDSSYSNYLKLANHEKKVQVGMESNNK----------------------SDMSPESV 407

Query: 168 LRSLAMNYENIPSIIRKRTPRKASTA 193
           LR+LAM YENIPSIIRKR+ +KA  A
Sbjct: 408 LRNLAMTYENIPSIIRKRSSKKACAA 433