Miyakogusa Predicted Gene

Lj2g3v2017300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2017300.1 tr|Q4V3D3|Q4V3D3_ARATH At4g00752 OS=Arabidopsis
thaliana GN=At4g00752 PE=2 SV=1,29.89,3e-17,no description,NULL;
seg,NULL; ARA4-INTERACTING PROTEIN,NULL; FAS-ASSOCIATED PROTEIN,NULL;
UBA-like,,CUFF.38425.1
         (378 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g102810.1 | Ara4-interacting protein | HC | chr4:42612859-...   296   3e-80
Medtr8g432670.1 | Ara4-interacting protein | HC | chr8:12392209-...    65   1e-10

>Medtr4g102810.1 | Ara4-interacting protein | HC |
           chr4:42612859-42608514 | 20130731
          Length = 580

 Score =  296 bits (757), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 198/372 (53%), Positives = 223/372 (59%), Gaps = 33/372 (8%)

Query: 3   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 62
           MA PNQE IDTFI+ITG+SQPIALQKLQEHGG+LNEAVNA+FSEGDR L  S       A
Sbjct: 1   MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMASS------A 54

Query: 63  AALQDDFMDIDDELHADELRGPLPLLSAART-NPFTLHDPTRGRSIFDSHLDPTTQAPFV 121
              Q DFMDIDD+   DE+  P  LLS AR  +PF+L DPT GRSI D+HL  T QAPFV
Sbjct: 55  TVPQGDFMDIDDQ--HDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFV 112

Query: 122 TLPREVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGPDIQGIIXXXXXXXXXXX 181
           T PREVR+IPIE KDGSQS PQ  H   P +EDVTG+V A GPDI G +           
Sbjct: 113 THPREVRQIPIEDKDGSQSTPQAGH--IPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNT 170

Query: 182 XXXXAHQDEQHNILGDTSRDQSAMPSAPRFENLPDYSND------XXXXXXXXXXXXXXX 235
                H          +S D SA PSAP  ENLPD SND                     
Sbjct: 171 LPAPTH----------SSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENY 220

Query: 236 XXXXLGRQTDLSEAGPQSMQSDLEDPELAHAVSLSLKTAEQEKALRKQGGEDGDVGAST- 294
               L RQ D+SE+GP   QS LEDPELAHAVSLSLKTAEQEKA R Q   +GDVGA T 
Sbjct: 221 SNHELDRQIDVSESGPNPRQSLLEDPELAHAVSLSLKTAEQEKARRVQ---EGDVGAPTA 277

Query: 295 GPSKSSEVELQEMTSNERLQTGSSSFQDEGEDLEEQPLVXXXXXXXXXXXXXXANND-EV 353
           GPSK+  VEL E++SN RLQ G     +E ED+EE PLV              +  D E+
Sbjct: 278 GPSKAQGVELGEVSSNGRLQAGEDE-DEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAEL 336

Query: 354 IEASTPPAAVQP 365
           IE+STP     P
Sbjct: 337 IESSTPAGTTVP 348


>Medtr8g432670.1 | Ara4-interacting protein | HC |
           chr8:12392209-12398954 | 20130731
          Length = 500

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 13/175 (7%)

Query: 3   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 62
           M+  + E++ TF+ ITG ++ +A+QKL+E+GGNLNEAVNAHF  GDR +        A  
Sbjct: 1   MSTLSPESVATFMRITGATEFVAVQKLEEYGGNLNEAVNAHFI-GDRHIQ---EQNLAAT 56

Query: 63  AALQDDFMDIDDELHADEL--RGPLPLLSAART-NPFTLHDPTRGRSIFD-SHLDPTTQA 118
           A    D+ + +++ + +    RG +PL +AAR   P  L D    R + D  +    T  
Sbjct: 57  ATPHYDYSEANNQNNENRAGSRGIMPLFNAARRFRPSLLLDSNYRRELRDLCNGFGATTI 116

Query: 119 PFVTLPR-----EVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGPDIQG 168
              T PR     E RE P  +     S        S    D  GS+ ++G    G
Sbjct: 117 SNSTPPRGSPQGEAREFPTGINSAHVSPYLYQPGLSYAGADTNGSLSSHGRGYYG 171