Miyakogusa Predicted Gene
- Lj2g3v2014190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2014190.1 Non Characterized Hit- tr|J4I9X7|J4I9X7_9APHY
Uncharacterized protein OS=Fibroporia radiculosa PE=4
,31.94,0.7,seg,NULL; PH domain-like,NULL; NUCLEOPORIN 50,NULL; no
description,Pleckstrin homology-like domain,CUFF.38418.1
(100 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g010950.1 | RanBP1 domain protein | HC | chr5:3042243-3049... 160 4e-40
Medtr5g010950.2 | RanBP1 domain protein | HC | chr5:3042380-3049... 152 9e-38
>Medtr5g010950.1 | RanBP1 domain protein | HC | chr5:3042243-3049094
| 20130731
Length = 356
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 84/100 (84%), Gaps = 2/100 (2%)
Query: 1 MGQLSIKCKEGVSKATRESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSVVAIFHTXXX 60
MG LSIKCKEGV+KAT+ESKPTIVVRNEVGKILLNALLYPGIKTN QKNS+VAIFHT
Sbjct: 259 MGNLSIKCKEGVAKATKESKPTIVVRNEVGKILLNALLYPGIKTNPQKNSLVAIFHT--A 316
Query: 61 XXXXXXXXXXVVARTFLIRMKTEDDRNKLASTIQEYAPTS 100
VVARTFLIRMKTEDDRNKLASTIQEYAP S
Sbjct: 317 GNADGGGDDIVVARTFLIRMKTEDDRNKLASTIQEYAPAS 356
>Medtr5g010950.2 | RanBP1 domain protein | HC | chr5:3042380-3049094
| 20130731
Length = 345
Score = 152 bits (383), Expect = 9e-38, Method: Composition-based stats.
Identities = 81/100 (81%), Positives = 84/100 (84%), Gaps = 2/100 (2%)
Query: 1 MGQLSIKCKEGVSKATRESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSVVAIFHTXXX 60
MG LSIKCKEGV+KAT+ESKPTIVVRNEVGKILLNALLYPGIKTN QKNS+VAIFHT
Sbjct: 248 MGNLSIKCKEGVAKATKESKPTIVVRNEVGKILLNALLYPGIKTNPQKNSLVAIFHT--A 305
Query: 61 XXXXXXXXXXVVARTFLIRMKTEDDRNKLASTIQEYAPTS 100
VVARTFLIRMKTEDDRNKLASTIQEYAP S
Sbjct: 306 GNADGGGDDIVVARTFLIRMKTEDDRNKLASTIQEYAPAS 345