Miyakogusa Predicted Gene

Lj2g3v2014170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2014170.1 Non Characterized Hit- tr|F6HQE5|F6HQE5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.83,0.00000000004, ,CUFF.38409.1
         (100 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g033960.1 | PPR containing plant-like protein | HC | chr1:...    75   2e-14

>Medtr1g033960.1 | PPR containing plant-like protein | HC |
           chr1:12282466-12279095 | 20130731
          Length = 745

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 6/98 (6%)

Query: 1   MYMEMVHYGFASHMFSVLALIPALFRVERHNEIRTVIENVLRSCNLNDSELHKALGETGD 60
           MY EMVH GF SHM +V+ALI AL +   ++E+ +V++N+L SC LND+EL KAL     
Sbjct: 651 MYTEMVHCGFVSHMVTVIALIKALSKEGMNDELSSVMQNILNSCTLNDAELSKALVRI-- 708

Query: 61  DIMKGKIEIEDALLNVLAKIAMDDGLLLNGGKCSYAPA 98
           +  +G +   D +LN+L ++A ++GLL +GG  S A A
Sbjct: 709 NFKEGHM---DVVLNLLTEMA-NNGLLPDGGDYSCASA 742