Miyakogusa Predicted Gene

Lj2g3v2003120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2003120.1 CUFF.38433.1
         (443 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   844   0.0  
Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   776   0.0  
Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase...   759   0.0  

>Medtr5g011040.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104283-3109011 | 20130731
          Length = 471

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/442 (89%), Positives = 424/442 (95%)

Query: 2   AKNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMSFCTDVEDVISMSLTVV 61
           A NVGILALDIYFPP CVQQEALEAHDGASKGKYTIGLGQDCMSFC+DVEDVISMSLTVV
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  NSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 121
           ++LL+KYEIDPKQIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPMSFESKL 181
           AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAP+SFESKL
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQFSISDA 241
           RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALDTC+K+F  KYEK  GKQFS+SDA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKLVQKSFARLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQSRDLEKA 301
           +YFVFHSPYNKLVQKSFARLVFSDFLRNPS+ DEV  EKLGPF TLSD+ESYQSRDLEKA
Sbjct: 246 DYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKA 305

Query: 302 SQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGL 361
           SQQVAKPLYDEKVQP+TLIPKQVGNMYTAS+YAAFASL+HNK+S+L GKRVILFSYGSGL
Sbjct: 306 SQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGL 365

Query: 362 TSTMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVEILKLMEHRYGAKEFVT 421
           T+TMFSLQ  E +HPFSLSNIARVMDVA KLKSRHEFPP+KF+E LKLMEHRYGAK++VT
Sbjct: 366 TATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVT 425

Query: 422 SKDISLLSPGTFYLTEVDSMYR 443
           SKD SLL+PGTFYLTEVD+MYR
Sbjct: 426 SKDSSLLAPGTFYLTEVDTMYR 447


>Medtr6g089570.1 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr6:22746750-22740317 | 20130731
          Length = 459

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/440 (81%), Positives = 403/440 (91%)

Query: 4   NVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMSFCTDVEDVISMSLTVVNS 63
           NVGILA+DIYFPPTCVQQEALEAHDG SKGKYTIGLGQDCM+FCT+VED+ISMS+TVV+S
Sbjct: 8   NVGILAIDIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTEVEDIISMSMTVVSS 67

Query: 64  LLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 123
           LLEKY IDPK+IGRLEVGSET+IDKSKSIKTFLMQIFE  GNTDIEGVDSTNACYGGTAA
Sbjct: 68  LLEKYNIDPKKIGRLEVGSETMIDKSKSIKTFLMQIFEDSGNTDIEGVDSTNACYGGTAA 127

Query: 124 LFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPMSFESKLRG 183
           LFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAML+GPDAP++FESKLRG
Sbjct: 128 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRG 187

Query: 184 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQFSISDAEY 243
           SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALD+CY+ F  K+EK  GK FS++D++Y
Sbjct: 188 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRVFCEKFEKSEGKHFSMADSDY 247

Query: 244 FVFHSPYNKLVQKSFARLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQSRDLEKASQ 303
           FVFHSPYNKLVQKSF RL F+DFLRNPS VDEV+++ L P+A+L+ +ESYQSRDLEKA+Q
Sbjct: 248 FVFHSPYNKLVQKSFGRLYFNDFLRNPSFVDEVSRQALAPYASLTGDESYQSRDLEKANQ 307

Query: 304 QVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTS 363
           Q AK +YD KVQP+TLIPKQVGNMYTASLYAAFASL+HNKH +L GKRV++FSYGSGLTS
Sbjct: 308 QAAKKIYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKHDSLVGKRVVMFSYGSGLTS 367

Query: 364 TMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVEILKLMEHRYGAKEFVTSK 423
           TMFS +  EGQHPF+LSNI  VM+V+GKLK R E PPEKFVE  K+MEH YG KEFVT +
Sbjct: 368 TMFSFRLQEGQHPFNLSNIVTVMNVSGKLKQRIELPPEKFVENTKIMEHHYGGKEFVTGQ 427

Query: 424 DISLLSPGTFYLTEVDSMYR 443
           D + L PGTF+LT+VDSMYR
Sbjct: 428 DCNYLLPGTFFLTKVDSMYR 447


>Medtr5g011040.2 | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
           HC | chr5:3104361-3108361 | 20130731
          Length = 427

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/396 (90%), Positives = 380/396 (95%)

Query: 2   AKNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMSFCTDVEDVISMSLTVV 61
           A NVGILALDIYFPP CVQQEALEAHDGASKGKYTIGLGQDCMSFC+DVEDVISMSLTVV
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  NSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 121
           ++LL+KYEIDPKQIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPMSFESKL 181
           AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAP+SFESKL
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQFSISDA 241
           RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALDTC+K+F  KYEK  GKQFS+SDA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKLVQKSFARLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQSRDLEKA 301
           +YFVFHSPYNKLVQKSFARLVFSDFLRNPS+ DEV  EKLGPF TLSD+ESYQSRDLEKA
Sbjct: 246 DYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKA 305

Query: 302 SQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGL 361
           SQQVAKPLYDEKVQP+TLIPKQVGNMYTAS+YAAFASL+HNK+S+L GKRVILFSYGSGL
Sbjct: 306 SQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGL 365

Query: 362 TSTMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHE 397
           T+TMFSLQ  E +HPFSLSNIARVMDVA KLKSRHE
Sbjct: 366 TATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHE 401