Miyakogusa Predicted Gene

Lj2g3v2003030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2003030.1 tr|Q00X22|Q00X22_OSTTA Senescence-inducible
chloroplast stay-green protein (ISS) OS=Ostreococcus
tau,33.33,1e-18,FAMILY NOT NAMED,NULL; seg,NULL; Staygreen,Staygreen
protein,NODE_47131_length_1379_cov_64.810730.path1.1
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011120.1 | senescence-inducible stay-green protein | HC |...   388   e-108
Medtr3g088795.1 | staygreen protein | HC | chr3:40615462-4061876...   174   7e-44

>Medtr5g011120.1 | senescence-inducible stay-green protein | HC |
           chr5:3162017-3164385 | 20130731
          Length = 263

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/267 (74%), Positives = 218/267 (81%), Gaps = 6/267 (2%)

Query: 1   MGTLTTAP--VLTSKFKPSSLSPQEKLSFFPHRRRFGKKNQAIVPVARLFGPAIFEASKL 58
           MGTLTTAP  +LTSKFKPS  SPQ K   FP+RRR  KKNQ+IVPVARLFGPAIFEASKL
Sbjct: 1   MGTLTTAPPPMLTSKFKPS-FSPQHK-PLFPNRRRLWKKNQSIVPVARLFGPAIFEASKL 58

Query: 59  KVLFLGVDENKHPGNLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVAQW 118
           KVLFLG+DE+KHPGNLPRTYTLTHSD+TSKLTLAISQTINNSQLQGWYN+LQRDEVVAQW
Sbjct: 59  KVLFLGIDEDKHPGNLPRTYTLTHSDVTSKLTLAISQTINNSQLQGWYNRLQRDEVVAQW 118

Query: 119 KKMKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLLNNYPELQD 178
           KK+KGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNL NNYPELQ+
Sbjct: 119 KKVKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLFNNYPELQE 178

Query: 179 ALVWVYFHSKIPEFNKVQCWGPLKEAAAXXXXXXXXXXXXVKMPDXXXXXXXXXXXXXXA 238
           ALVWVYFHSKIPEFNKV+CWGPLKEA+             + +P+               
Sbjct: 179 ALVWVYFHSKIPEFNKVECWGPLKEASQPTSGTQRDHQN-LTLPEPCQETCECCFPPL-K 236

Query: 239 LNPIQWSEEVPSPNYEAFDGVGTQQNL 265
           L+P+  S EV +  YE  DG+ TQQ+L
Sbjct: 237 LSPMPCSNEVHNDTYEPIDGIETQQSL 263


>Medtr3g088795.1 | staygreen protein | HC | chr3:40615462-40618761 |
           20130731
          Length = 269

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 5/168 (2%)

Query: 38  NQAIVPVARLFGP-AIFEASKLKVLFLGVDENKHPGNLPRTYTLTHSDITSKLTLAISQT 96
           N  +    RL GP A FEA+KLKV+ L    N++   +PRTY L+H D+T+ LTLA+S  
Sbjct: 50  NSLVYETVRLLGPPAKFEATKLKVVLLEDQINRYASIIPRTYILSHCDLTANLTLAVSNV 109

Query: 97  INNSQLQGWYNKLQRDEVVAQWKKMKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELP 156
           I   QL+GWY K   D+VVA+WKK+K +M LHVHC +SG  FL D+ A  RY IF KE+ 
Sbjct: 110 IKLEQLRGWYEK---DDVVAEWKKVKNEMCLHVHCFVSGPTFL-DLAAEFRYHIFSKEMT 165

Query: 157 VVLKAFVHGDGNLLNNYPELQDALVWVYFHSKIPEFNKVQCWGPLKEA 204
           +VLKA  +GD  L   +PEL D++V VYFHS   ++N+++CWGPLK+A
Sbjct: 166 LVLKAIQYGDSVLFQEHPELLDSIVRVYFHSSSKKYNRMECWGPLKDA 213