Miyakogusa Predicted Gene

Lj2g3v2002960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002960.1 Non Characterized Hit- tr|E1ZNF2|E1ZNF2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.46,0.0000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.38400.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011220.1 | PGR5-like protein 1A | HC | chr5:3189399-31865...   291   2e-79
Medtr4g102440.1 | PGR5-like protein 1A | HC | chr4:42460563-4246...   263   7e-71
Medtr2g097230.1 | PGR5-like protein 1A, putative | HC | chr2:415...    48   4e-06

>Medtr5g011220.1 | PGR5-like protein 1A | HC | chr5:3189399-3186523
           | 20130731
          Length = 315

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 146/154 (94%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           MEGSEIVAEGPRCS+RSRKVYSDL++DYLK  LL VPATV+ALGLFFFLDDVTGFEIN L
Sbjct: 162 MEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYL 221

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           I IPEP+SFILTWFAAVPFI+W AQSITNAII DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 222 IAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSIS 281

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG+STNKVKC NCGTAM+YDS+TRLITLPEGSNA
Sbjct: 282 SGDSTNKVKCENCGTAMLYDSTTRLITLPEGSNA 315


>Medtr4g102440.1 | PGR5-like protein 1A | HC |
           chr4:42460563-42464677 | 20130731
          Length = 319

 Score =  263 bits (671), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 136/149 (91%)

Query: 2   EGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLI 61
           EGSEIV EGPRCS+RS+KVYSDLS+DYL+MFLLNVPATVVALGLFFFLDD+TGFEI  L+
Sbjct: 171 EGSEIVVEGPRCSLRSKKVYSDLSVDYLRMFLLNVPATVVALGLFFFLDDLTGFEITYLL 230

Query: 62  EIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISS 121
           E+PEP+SFI TWFAAVP IV+LA S+T AII DF+ILKGPCPNCGTENTSFFGTILSISS
Sbjct: 231 ELPEPFSFIFTWFAAVPLIVYLALSLTRAIIKDFVILKGPCPNCGTENTSFFGTILSISS 290

Query: 122 GNSTNKVKCVNCGTAMVYDSSTRLITLPE 150
           G S NKVKC +CGT MVYDS TRLITLPE
Sbjct: 291 GGSNNKVKCSDCGTEMVYDSGTRLITLPE 319


>Medtr2g097230.1 | PGR5-like protein 1A, putative | HC |
           chr2:41516368-41519630 | 20130731
          Length = 286

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 24/152 (15%)

Query: 3   GSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATV-------VALGLFFFLDDVT-- 53
           GS+ V + PRCSIR +  Y+D   D   +F L    T+         +G  F+   +   
Sbjct: 100 GSKSVVKYPRCSIRRQSTYADAEEDLSMVFALASAWTLFFAFGSSAMVGPMFYSISLAYQ 159

Query: 54  -----GFEINSLIEIPEPYSFILT-WFAAVPFIVWL------AQSITNAIINDFLILKGP 101
                G    S      P   + T  F A+ F++         +++     ND   LKG 
Sbjct: 160 NAFNLGLSYGSQASELSPLFMVNTILFTALGFVIGYPVASASVKTLQGLWRNDLAALKGS 219

Query: 102 CPNCGTENTSFFGTILSISSGNSTNKVKCVNC 133
           CPNCG E    F  + +  + NS ++ KC  C
Sbjct: 220 CPNCGEE---VFAFVRTDKANNSPHRAKCHVC 248