Miyakogusa Predicted Gene

Lj2g3v2002930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002930.1 Non Characterized Hit- tr|I1JA12|I1JA12_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,69.91,0,YTH,YTH
domain; SPLICING FACTOR YT521-B,NULL; YTH (YT521-B HOMOLOGY)
DOMAIN-CONTAINING,NULL,NODE_54584_length_1674_cov_28.550777.path1.1
         (403 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g029540.1 | cleavage and polyadenylation specificity facto...   142   5e-34
Medtr6g032970.1 | evolutionarily carboxy-terminal region protein...    81   2e-15
Medtr4g005110.1 | evolutionarily carboxy-terminal region protein...    78   1e-14
Medtr2g032660.1 | evolutionarily carboxy-terminal region protein...    77   3e-14
Medtr2g063460.2 | evolutionarily carboxy-terminal region protein...    76   6e-14
Medtr2g063460.1 | evolutionarily carboxy-terminal region protein...    76   6e-14
Medtr7g085500.1 | evolutionarily carboxy-terminal region protein...    75   2e-13
Medtr4g123630.1 | evolutionarily carboxy-terminal region protein...    74   2e-13
Medtr8g088390.1 | evolutionarily carboxy-terminal region protein...    74   3e-13
Medtr8g088390.2 | evolutionarily carboxy-terminal region protein...    74   3e-13
Medtr2g005840.3 | evolutionarily carboxy-terminal region protein...    73   5e-13
Medtr2g005840.2 | evolutionarily carboxy-terminal region protein...    73   5e-13
Medtr2g005840.5 | evolutionarily carboxy-terminal region protein...    73   5e-13
Medtr2g005840.1 | evolutionarily carboxy-terminal region protein...    73   5e-13
Medtr2g005840.4 | evolutionarily carboxy-terminal region protein...    73   5e-13

>Medtr2g029540.1 | cleavage and polyadenylation specificity factor
           CPSF30 | HC | chr2:11072135-11082678 | 20130731
          Length = 683

 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 2/136 (1%)

Query: 71  KYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDCVILIFSVNMSGAFQGYAKM 130
           +YFI+KS + +N+ LS+++G+WATQ  NE  L+EAF + + VILIFSVN +  FQG AKM
Sbjct: 260 RYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKM 319

Query: 131 VSSIGRR-RDNVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLNDYKPVKISRD 189
            S IG       W+   G ++ +GRNF VKWL L +L FH+T HL+NP N+  PVKISRD
Sbjct: 320 TSRIGGSVAGGNWKYAHGTAH-YGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRD 378

Query: 190 CQELSPDIGLALCELL 205
           CQEL P IG  L  LL
Sbjct: 379 CQELEPSIGEQLASLL 394


>Medtr6g032970.1 | evolutionarily carboxy-terminal region protein |
           HC | chr6:10204106-10209200 | 20130731
          Length = 642

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 12/144 (8%)

Query: 69  NKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAF-----HNSDC-VILIFSVNMSG 122
           + K+F+IKS S  +I  SM+  +W +       LD A+      ++DC + L+FSVN SG
Sbjct: 401 DAKFFVIKSYSEDDIHKSMKYNVWTSTPNGNKKLDAAYLEAKEKSADCPIFLLFSVNTSG 460

Query: 123 AFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLNDY 181
            F G A+MVS +   R    W++     + W   F VKW  + D+P +   H+    N+ 
Sbjct: 461 QFVGLAEMVSPVDFDRTVEYWQQ-----DRWTGCFSVKWRIIKDIPNNVLRHITLENNEN 515

Query: 182 KPVKISRDCQELSPDIGLALCELL 205
           KPV  SRD QE+  + G+ + ++ 
Sbjct: 516 KPVTNSRDTQEVKFEKGVEILKIF 539


>Medtr4g005110.1 | evolutionarily carboxy-terminal region protein |
           HC | chr4:57104-67136 | 20130731
          Length = 642

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 67  LQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSD-----C-VILIFSVNM 120
            ++ K+F+IKS S  N+  S++ G+WA+       LD A+  +      C + L FSVN 
Sbjct: 392 FKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNA 451

Query: 121 SGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLN 179
           S  F G A+MV  +   +  + W++     + W   F VKW  + D+P  +  H+    N
Sbjct: 452 SAQFCGVAEMVGPVNFDKSVDFWQQ-----DKWSGQFPVKWHIIKDVPNSQFRHIVLENN 506

Query: 180 DYKPVKISRDCQELSPDIGLALCELL 205
           D KPV  SRD QE+    G+ +  + 
Sbjct: 507 DNKPVTNSRDTQEVKLQQGIEMLTIF 532


>Medtr2g032660.1 | evolutionarily carboxy-terminal region protein |
           HC | chr2:12289044-12294565 | 20130731
          Length = 694

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (10%)

Query: 69  NKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSD---------C-VILIFSV 118
           N K+F+IKS S  ++  S++  +W++ +     L  A+ ++          C + L FSV
Sbjct: 365 NAKFFVIKSYSEDDVHKSIKYNVWSSTVHGNRKLGNAYEDTKKVSAEKSGVCPIFLFFSV 424

Query: 119 NMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNP 177
           N SG F G A+M+ S+   +D + W++     + W  +F VKW  + D+P     H+   
Sbjct: 425 NASGQFCGVAEMIGSVDFNKDMDFWQQ-----DKWSGSFPVKWHIIKDVPNPNFRHIILD 479

Query: 178 LNDYKPVKISRDCQELSPDIGLALCELL 205
            N+ KPV  SRD QE+    GL + ++ 
Sbjct: 480 NNENKPVTNSRDTQEIMYSKGLEMLKIF 507


>Medtr2g063460.2 | evolutionarily carboxy-terminal region protein |
           HC | chr2:26745358-26750617 | 20130731
          Length = 582

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHN---------SDC-VILI 115
           K  +  +F+IKS S  ++  S++  +WA+       LD AF +         S C V L 
Sbjct: 368 KYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRMEEKGSKCPVFLF 427

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +   +  + W++     + W   F VKW  + D+P  +  H+
Sbjct: 428 FSVNASGQFCGVAEMIGRVDFNKSMDFWQQ-----DKWNGYFPVKWHIIKDIPNPQLRHI 482

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELL 205
               ND+KPV  SRD QE+    G+ +  + 
Sbjct: 483 ILENNDHKPVTNSRDTQEIHFPQGIEMLNIF 513


>Medtr2g063460.1 | evolutionarily carboxy-terminal region protein |
           HC | chr2:26745358-26750617 | 20130731
          Length = 584

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHN---------SDC-VILI 115
           K  +  +F+IKS S  ++  S++  +WA+       LD AF +         S C V L 
Sbjct: 370 KYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRMEEKGSKCPVFLF 429

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +   +  + W++     + W   F VKW  + D+P  +  H+
Sbjct: 430 FSVNASGQFCGVAEMIGRVDFNKSMDFWQQ-----DKWNGYFPVKWHIIKDIPNPQLRHI 484

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELL 205
               ND+KPV  SRD QE+    G+ +  + 
Sbjct: 485 ILENNDHKPVTNSRDTQEIHFPQGIEMLNIF 515


>Medtr7g085500.1 | evolutionarily carboxy-terminal region protein |
           HC | chr7:33129897-33124920 | 20130731
          Length = 659

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 71  KYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSD-C-VILIFSVNMSGAFQGYA 128
           K+FIIKS S  ++  S++  +WA+       LD A+  +  C + L+FSVN SG F G A
Sbjct: 433 KFFIIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAGGCPIFLLFSVNTSGQFVGLA 492

Query: 129 KMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLNDYKPVKIS 187
           +M   +   +    W++     + W   F VKW  + D+P     H+    N+ KPV  S
Sbjct: 493 EMTGPVDFDKTVEYWQQ-----DRWTGCFNVKWHIIKDIPNGVLRHITLENNENKPVTNS 547

Query: 188 RDCQELSPDIGLALCELL 205
           RD QE+  + G+ + ++ 
Sbjct: 548 RDTQEVKFEKGVQIVKIF 565


>Medtr4g123630.1 | evolutionarily carboxy-terminal region protein |
           HC | chr4:50901357-50896559 | 20130731
          Length = 651

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 71  KYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNS---------DC-VILIFSVNM 120
           K+F+IKS S  ++  S++  +W++       L  A+ ++          C + L FSVN 
Sbjct: 333 KFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLQSAYEDARRKATGKSGGCPIFLFFSVNA 392

Query: 121 SGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLN 179
           SG F G A+MV  +   +D + W++     + W  +F VKW  + D+P     H+    N
Sbjct: 393 SGQFCGVAEMVGPVDFNKDMDFWQQ-----DKWSGSFPVKWHIIKDVPNGNFRHIILENN 447

Query: 180 DYKPVKISRDCQELSPDIGLALCELL 205
           ++KPV  SRD QE+    GL + ++ 
Sbjct: 448 EFKPVTNSRDTQEIMYRKGLEMLKIF 473


>Medtr8g088390.1 | evolutionarily carboxy-terminal region protein |
           HC | chr8:36620729-36616338 | 20130731
          Length = 670

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 71  KYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSD-----C-VILIFSVNMSGAF 124
           K+F+IKS S  +I  S++  +WA+       LD A+  +      C + L+FSVN SG F
Sbjct: 422 KFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYQEAQQKSGGCPIFLLFSVNTSGQF 481

Query: 125 QGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLNDYKP 183
            G A+M   +   +    W++     + W   F +KW  + D+P +   H+    N+ KP
Sbjct: 482 VGLAEMTGPVDFNKSLEYWQQ-----DKWMGCFPLKWHIVKDVPNNVLRHITLENNENKP 536

Query: 184 VKISRDCQELSPDIGLALCELL 205
           V  SRD QE+  + GL L ++ 
Sbjct: 537 VTNSRDTQEIMLEPGLKLLKIF 558


>Medtr8g088390.2 | evolutionarily carboxy-terminal region protein |
           HC | chr8:36620643-36616338 | 20130731
          Length = 605

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 71  KYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSD-----C-VILIFSVNMSGAF 124
           K+F+IKS S  +I  S++  +WA+       LD A+  +      C + L+FSVN SG F
Sbjct: 357 KFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYQEAQQKSGGCPIFLLFSVNTSGQF 416

Query: 125 QGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHLKNPLNDYKP 183
            G A+M   +   +    W++     + W   F +KW  + D+P +   H+    N+ KP
Sbjct: 417 VGLAEMTGPVDFNKSLEYWQQ-----DKWMGCFPLKWHIVKDVPNNVLRHITLENNENKP 471

Query: 184 VKISRDCQELSPDIGLALCELL 205
           V  SRD QE+  + GL L ++ 
Sbjct: 472 VTNSRDTQEIMLEPGLKLLKIF 493


>Medtr2g005840.3 | evolutionarily carboxy-terminal region protein |
           HC | chr2:345315-338760 | 20130731
          Length = 481

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDC----------VILI 115
           K +  K+++IKS +  +I   ++  +W +       L+ AF N++           + L 
Sbjct: 247 KYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLF 306

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +  ++D   W     K + +   F +KW  + D+P  +  H+
Sbjct: 307 FSVNASGQFVGVAEMLGPVDFKKDMKFW-----KLDKYNGFFPIKWHIIKDVPNRQFAHI 361

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELLDAKNNADGLL 215
              +N+ K V  SRD QE++   GL + ++  +      LL
Sbjct: 362 TLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLL 402


>Medtr2g005840.2 | evolutionarily carboxy-terminal region protein |
           HC | chr2:345315-338760 | 20130731
          Length = 481

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDC----------VILI 115
           K +  K+++IKS +  +I   ++  +W +       L+ AF N++           + L 
Sbjct: 247 KYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLF 306

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +  ++D   W     K + +   F +KW  + D+P  +  H+
Sbjct: 307 FSVNASGQFVGVAEMLGPVDFKKDMKFW-----KLDKYNGFFPIKWHIIKDVPNRQFAHI 361

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELLDAKNNADGLL 215
              +N+ K V  SRD QE++   GL + ++  +      LL
Sbjct: 362 TLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLL 402


>Medtr2g005840.5 | evolutionarily carboxy-terminal region protein |
           HC | chr2:345315-338762 | 20130731
          Length = 481

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDC----------VILI 115
           K +  K+++IKS +  +I   ++  +W +       L+ AF N++           + L 
Sbjct: 247 KYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLF 306

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +  ++D   W     K + +   F +KW  + D+P  +  H+
Sbjct: 307 FSVNASGQFVGVAEMLGPVDFKKDMKFW-----KLDKYNGFFPIKWHIIKDVPNRQFAHI 361

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELLDAKNNADGLL 215
              +N+ K V  SRD QE++   GL + ++  +      LL
Sbjct: 362 TLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLL 402


>Medtr2g005840.1 | evolutionarily carboxy-terminal region protein |
           HC | chr2:345315-338762 | 20130731
          Length = 512

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDC----------VILI 115
           K +  K+++IKS +  +I   ++  +W +       L+ AF N++           + L 
Sbjct: 278 KYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLF 337

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +  ++D   W     K + +   F +KW  + D+P  +  H+
Sbjct: 338 FSVNASGQFVGVAEMLGPVDFKKDMKFW-----KLDKYNGFFPIKWHIIKDVPNRQFAHI 392

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELLDAKNNADGLL 215
              +N+ K V  SRD QE++   GL + ++  +      LL
Sbjct: 393 TLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLL 433


>Medtr2g005840.4 | evolutionarily carboxy-terminal region protein |
           HC | chr2:345315-338762 | 20130731
          Length = 512

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 66  KLQNKKYFIIKSLSHQNIRLSMEKGIWATQIMNEPILDEAFHNSDC----------VILI 115
           K +  K+++IKS +  +I   ++  +W +       L+ AF N++           + L 
Sbjct: 278 KYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLF 337

Query: 116 FSVNMSGAFQGYAKMVSSIGRRRD-NVWREGSGKSNPWGRNFKVKWLCLNDLPFHETLHL 174
           FSVN SG F G A+M+  +  ++D   W     K + +   F +KW  + D+P  +  H+
Sbjct: 338 FSVNASGQFVGVAEMLGPVDFKKDMKFW-----KLDKYNGFFPIKWHIIKDVPNRQFAHI 392

Query: 175 KNPLNDYKPVKISRDCQELSPDIGLALCELLDAKNNADGLL 215
              +N+ K V  SRD QE++   GL + ++  +      LL
Sbjct: 393 TLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLL 433