Miyakogusa Predicted Gene

Lj2g3v2002320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002320.1 tr|Q2JIY2|Q2JIY2_SYNJB Pentapeptide repeat family
protein OS=Synechococcus sp. (strain
JA-2-3B'a(2-1,41.54,1e-18,Pentapeptide_4,NULL; seg,NULL; Pentapeptide
repeat-like,NULL; UNCHARACTERIZED,NULL,CUFF.38345.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g012110.1 | thylakoid lumenal protein | HC | chr5:3585463-...   361   e-100
Medtr5g012110.2 | thylakoid lumenal protein | HC | chr5:3585456-...   342   2e-94
Medtr3g491890.1 | thylakoid lumenal 17.4 kDa protein | HC | chr3...    63   2e-10
Medtr3g068150.1 | thylakoid lumenal 15 kDa protein | HC | chr3:3...    62   8e-10

>Medtr5g012110.1 | thylakoid lumenal protein | HC |
           chr5:3585463-3583273 | 20130731
          Length = 262

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/194 (91%), Positives = 186/194 (95%), Gaps = 1/194 (0%)

Query: 67  VLCQMNSNRDHPQESKK-WGKLVSATLAAAVIAFSSDMSALADLNKFEAEIRGEFGIGSA 125
           V+C+M+ N DHPQES K WGKLVSATLAAAVI FSSDMSALADLNKFEAE+RGEFGIGSA
Sbjct: 31  VICKMSLNNDHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSA 90

Query: 126 AQFGSADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSD 185
           AQFGSADL+K VHVNENFRRANFTSADMRESDFSGSTFNGAY+EKAVA+KANF+GADLSD
Sbjct: 91  AQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSD 150

Query: 186 TLMDRMVLNEANLTNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNP 245
           TLMDRMVLNEANLTNAIL RTVLTRSDLGG+IIEGADFSDAVLDL QKLALCKYASGTNP
Sbjct: 151 TLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNP 210

Query: 246 VTGVSTRVSLGCGN 259
           VTGVSTRVSLGCGN
Sbjct: 211 VTGVSTRVSLGCGN 224


>Medtr5g012110.2 | thylakoid lumenal protein | HC |
           chr5:3585456-3583277 | 20130731
          Length = 232

 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 167/181 (92%), Positives = 175/181 (96%)

Query: 79  QESKKWGKLVSATLAAAVIAFSSDMSALADLNKFEAEIRGEFGIGSAAQFGSADLRKAVH 138
           + +K WGKLVSATLAAAVI FSSDMSALADLNKFEAE+RGEFGIGSAAQFGSADL+K VH
Sbjct: 14  ESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVH 73

Query: 139 VNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANL 198
           VNENFRRANFTSADMRESDFSGSTFNGAY+EKAVA+KANF+GADLSDTLMDRMVLNEANL
Sbjct: 74  VNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANL 133

Query: 199 TNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGCG 258
           TNAIL RTVLTRSDLGG+IIEGADFSDAVLDL QKLALCKYASGTNPVTGVSTRVSLGCG
Sbjct: 134 TNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCG 193

Query: 259 N 259
           N
Sbjct: 194 N 194


>Medtr3g491890.1 | thylakoid lumenal 17.4 kDa protein | HC |
           chr3:41850162-41845986 | 20130731
          Length = 240

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 132 DLRKAVHVNE--NFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMD 189
           DLRK    NE  N +    ++A M ++ F G+      + KA A   +F G D S+ ++D
Sbjct: 117 DLRKCDFTNEKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGGSFKGVDFSNAVLD 176

Query: 190 RMVLNEANLTNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGV 249
           R+   +A+L  A+   TVL+ S    + +EGA F D ++       +C+     N   G 
Sbjct: 177 RVNFGKADLQGAVFRNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKICR-----NTTIGD 231

Query: 250 STRVSLGC 257
             R  LGC
Sbjct: 232 EGRAELGC 239


>Medtr3g068150.1 | thylakoid lumenal 15 kDa protein | HC |
           chr3:30786153-30781995 | 20130731
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 141 ENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLM---DRMVLN--E 195
           ++F        D + S    + F GA L  A  + A+ +GADLSDT +   D  + N  +
Sbjct: 101 KDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDTDLRSADFSLANVTK 160

Query: 196 ANLTNAILVRTVLT-RSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVS 254
            NL+NA L   ++T  +   GS I GADF+D  L   Q+  LCK A G N  TG +TR +
Sbjct: 161 VNLSNANLEGALVTGNTSFKGSNITGADFTDVPLREDQREFLCKIADGVNSTTGNATRDT 220

Query: 255 LGC 257
           L C
Sbjct: 221 LLC 223