Miyakogusa Predicted Gene

Lj2g3v2001380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2001380.1 Non Characterized Hit- tr|I0YT40|I0YT40_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,39.39,0.0000000004,MUTS HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR
MUTS RELATED PROTEINS,NULL,CUFF.38318.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g012900.1 | DNA mismatch repair MSH4-like protein, putativ...   174   2e-44

>Medtr5g012900.1 | DNA mismatch repair MSH4-like protein, putative |
           HC | chr5:3982230-3989626 | 20130731
          Length = 556

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 97/102 (95%)

Query: 1   MEDDGGESSSFVVGIIENRAKEVGIAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPI 60
           ME+DGGE SSF+V IIENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPI
Sbjct: 1   MENDGGEGSSFLVSIIENRAKEVGLAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPI 60

Query: 61  VIIVPPNKSASNSTAAVTDFIDRFYGSVKKVVVARCCFDDTK 102
           VIIVPPNKSAS+ST+ VT+ +DRFYGSVKKVV+AR CFDDTK
Sbjct: 61  VIIVPPNKSASSSTSTVTELVDRFYGSVKKVVLARGCFDDTK 102