Miyakogusa Predicted Gene

Lj2g3v2001370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2001370.1 tr|G7K4X7|G7K4X7_MEDTR ETHE1 protein
mitochondrial OS=Medicago truncatula GN=MTR_5g097770 PE=4
SV=1,68.97,0.000000000000003,MutS_V,DNA mismatch repair protein MutS,
C-terminal; MUTS HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR
,CUFF.38315.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g097770.1 | hypothetical protein | HC | chr5:42824927-4282...    86   1e-17
Medtr5g021570.1 | serine carboxypeptidase-like protein | HC | ch...    85   2e-17

>Medtr5g097770.1 | hypothetical protein | HC |
           chr5:42824927-42820035 | 20130731
          Length = 254

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 3/94 (3%)

Query: 33  QLKEGPKHIPHYGLLLAEVAGLPSPVIENARMITSRISEKEMRRMKVNCLQYHSIQRAYH 92
           +L+  PK+  ++G  ++E   + S    +  +   R+ ++E +RM VNCLQ HSIQ AYH
Sbjct: 164 RLEVAPKN-ENWGFNISEREAMLSAGTVDKNV--ERVYKEEKKRMDVNCLQNHSIQSAYH 220

Query: 93  VAQRLLCLKYSNQDEDTIRQALRNLKETCLNHKL 126
           VAQRLLCLKYSNQ  +TIR AL NLKE C+  KL
Sbjct: 221 VAQRLLCLKYSNQVGNTIRPALMNLKEYCIKQKL 254


>Medtr5g021570.1 | serine carboxypeptidase-like protein | HC |
           chr5:8344807-8349497 | 20130731
          Length = 397

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query: 68  RISEKEMRRMKVNCLQYHSIQRAYHVAQRLLCLKYSNQDEDTIRQALRNLKETCLNHK 125
           R+ ++E +RM VNCLQ HSIQ AYHVAQR LCLKYSNQ  +TIR AL NLKE C+  K
Sbjct: 187 RVYKEEKKRMDVNCLQNHSIQSAYHVAQRFLCLKYSNQVGNTIRPALMNLKEYCIKQK 244