Miyakogusa Predicted Gene

Lj2g3v1989100.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989100.2 tr|A9TEH6|A9TEH6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169610,52.48,0.0000000000005,seg,NULL;
coiled-coil,NULL,CUFF.38297.2
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013280.3 | transmembrane protein, putative | HC | chr5:41...   386   e-107
Medtr5g013280.1 | transmembrane protein, putative | HC | chr5:41...   350   7e-97
Medtr5g013280.2 | transmembrane protein, putative | HC | chr5:41...   342   4e-94

>Medtr5g013280.3 | transmembrane protein, putative | HC |
           chr5:4181676-4185736 | 20130731
          Length = 295

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/307 (65%), Positives = 229/307 (74%), Gaps = 18/307 (5%)

Query: 1   MESSSESERDGIGIRIENPFTLKVGQVFTXXXXXXXXXXXXXRPLNLGAIPMLNEVMSAT 60
           MES +E       IR  NPFTLKVGQVFT             RPLNLGAIPMLN+VMSAT
Sbjct: 1   MESKNEENE----IRFSNPFTLKVGQVFTGFGIGCGVGIGVGRPLNLGAIPMLNQVMSAT 56

Query: 61  RGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKPGVLNQIQSCVAV 120
           RGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKPGVLNQIQSC+ +
Sbjct: 57  RGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKPGVLNQIQSCLVM 116

Query: 121 AVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLATRSTDHISQSPAG 180
            +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA +S D +SQ  AG
Sbjct: 117 TMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAAKSADQLSQGLAG 171

Query: 181 SQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLKGEGGGSDEA 240
           +QP+ IG AF+ T         A+K TSVDS +GSRTEKVLNNFLQ+P+LKGEGGG  E+
Sbjct: 172 TQPMNIGLAFDKT---------AVKDTSVDSTYGSRTEKVLNNFLQNPLLKGEGGGPTES 222

Query: 241 AKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHASHSGRMRNTLPC 300
           A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL AS SGR+RN LPC
Sbjct: 223 AGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEASSSGRIRNMLPC 282

Query: 301 TDCFECR 307
           TDCFECR
Sbjct: 283 TDCFECR 289


>Medtr5g013280.1 | transmembrane protein, putative | HC |
           chr5:4181711-4186675 | 20130731
          Length = 292

 Score =  350 bits (899), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 186/291 (63%), Positives = 214/291 (73%), Gaps = 18/291 (6%)

Query: 1   MESSSESERDGIGIRIENPFTLKVGQVFTXXXXXXXXXXXXXRPLNLGAIPMLNEVMSAT 60
           MES +E       IR  NPFTLKVGQVFT             RPLNLGAIPMLN+VMSAT
Sbjct: 1   MESKNEENE----IRFSNPFTLKVGQVFTGFGIGCGVGIGVGRPLNLGAIPMLNQVMSAT 56

Query: 61  RGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKPGVLNQIQSCVAV 120
           RGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKPGVLNQIQSC+ +
Sbjct: 57  RGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKPGVLNQIQSCLVM 116

Query: 121 AVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLATRSTDHISQSPAG 180
            +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA +S D +SQ  AG
Sbjct: 117 TMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAAKSADQLSQGLAG 171

Query: 181 SQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLKGEGGGSDEA 240
           +QP+ IG AF+ T         A+K TSVDS +GSRTEKVLNNFLQ+P+LKGEGGG  E+
Sbjct: 172 TQPMNIGLAFDKT---------AVKDTSVDSTYGSRTEKVLNNFLQNPLLKGEGGGPTES 222

Query: 241 AKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHASHS 291
           A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL AS S
Sbjct: 223 AGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEASSS 273


>Medtr5g013280.2 | transmembrane protein, putative | HC |
           chr5:4182031-4185736 | 20130731
          Length = 248

 Score =  342 bits (876), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/256 (67%), Positives = 201/256 (78%), Gaps = 14/256 (5%)

Query: 52  MLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKPGVL 111
           MLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKPGVL
Sbjct: 1   MLNQVMSATRGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKPGVL 60

Query: 112 NQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLATRST 171
           NQIQSC+ + +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA +S 
Sbjct: 61  NQIQSCLVMTMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAAKSA 115

Query: 172 DHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLK 231
           D +SQ  AG+QP+ IG AF+ TA+K TSVDS          +GSRTEKVLNNFLQ+P+LK
Sbjct: 116 DQLSQGLAGTQPMNIGLAFDKTAVKDTSVDST---------YGSRTEKVLNNFLQNPLLK 166

Query: 232 GEGGGSDEAAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHASHS 291
           GEGGG  E+A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL AS S
Sbjct: 167 GEGGGPTESAGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEASSS 226

Query: 292 GRMRNTLPCTDCFECR 307
           GR+RN LPCTDCFECR
Sbjct: 227 GRIRNMLPCTDCFECR 242