Miyakogusa Predicted Gene

Lj2g3v1989100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989100.1 tr|A9TEH6|A9TEH6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169610,49.3,0.00000000009,seg,NULL;
coiled-coil,NULL,CUFF.38297.1
         (279 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013280.1 | transmembrane protein, putative | HC | chr5:41...   323   1e-88
Medtr5g013280.3 | transmembrane protein, putative | HC | chr5:41...   313   2e-85
Medtr5g013280.2 | transmembrane protein, putative | HC | chr5:41...   307   9e-84

>Medtr5g013280.1 | transmembrane protein, putative | HC |
           chr5:4181711-4186675 | 20130731
          Length = 292

 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/259 (64%), Positives = 199/259 (76%), Gaps = 14/259 (5%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           AIPMLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKP
Sbjct: 45  AIPMLNQVMSATRGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKP 104

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLAT 140
           GVLNQIQSC+ + +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA 
Sbjct: 105 GVLNQIQSCLVMTMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAA 159

Query: 141 RSTDHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSP 200
           +S D +SQ  AG+QP+ IG AF+ TA+K TSVDS          +GSRTEKVLNNFLQ+P
Sbjct: 160 KSADQLSQGLAGTQPMNIGLAFDKTAVKDTSVDST---------YGSRTEKVLNNFLQNP 210

Query: 201 VLKGEGGGSDEAAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHA 260
           +LKGEGGG  E+A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL A
Sbjct: 211 LLKGEGGGPTESAGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEA 270

Query: 261 SHSDRNVPDSKRENDSEKE 279
           S SD     SKREN++ ++
Sbjct: 271 SSSDLYTRSSKRENNNSQK 289


>Medtr5g013280.3 | transmembrane protein, putative | HC |
           chr5:4181676-4185736 | 20130731
          Length = 295

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/245 (66%), Positives = 190/245 (77%), Gaps = 14/245 (5%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           AIPMLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKP
Sbjct: 45  AIPMLNQVMSATRGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKP 104

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLAT 140
           GVLNQIQSC+ + +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA 
Sbjct: 105 GVLNQIQSCLVMTMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAA 159

Query: 141 RSTDHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSP 200
           +S D +SQ  AG+QP+ IG AF+ T         A+K TSVDS +GSRTEKVLNNFLQ+P
Sbjct: 160 KSADQLSQGLAGTQPMNIGLAFDKT---------AVKDTSVDSTYGSRTEKVLNNFLQNP 210

Query: 201 VLKGEGGGSDEAAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHA 260
           +LKGEGGG  E+A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL A
Sbjct: 211 LLKGEGGGPTESAGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEA 270

Query: 261 SHSDR 265
           S S R
Sbjct: 271 SSSGR 275


>Medtr5g013280.2 | transmembrane protein, putative | HC |
           chr5:4182031-4185736 | 20130731
          Length = 248

 Score =  307 bits (786), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/242 (66%), Positives = 187/242 (77%), Gaps = 14/242 (5%)

Query: 24  MLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKPGVL 83
           MLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKPGVL
Sbjct: 1   MLNQVMSATRGATDAFSGVSRHVNTSLRKIGAKNIEVGVGCGVGFGHGFGAGLAVKPGVL 60

Query: 84  NQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLATRST 143
           NQIQSC+ + +TKMM+KFG+TPSLPF+   +PASLQSATG      +S+GS+ QLA +S 
Sbjct: 61  NQIQSCLVMTMTKMMIKFGITPSLPFNLGVLPASLQSATGA-----VSSGSVTQLAAKSA 115

Query: 144 DHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLK 203
           D +SQ  AG+QP+ IG AF+ TA+K TSVDS          +GSRTEKVLNNFLQ+P+LK
Sbjct: 116 DQLSQGLAGTQPMNIGLAFDKTAVKDTSVDST---------YGSRTEKVLNNFLQNPLLK 166

Query: 204 GEGGGSDEAAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHASHS 263
           GEGGG  E+A RL +ENKILQMVLKHQQ+IEELVEENEKLRQILV++LKVP SKL AS S
Sbjct: 167 GEGGGPTESAGRLIAENKILQMVLKHQQMIEELVEENEKLRQILVKELKVPPSKLEASSS 226

Query: 264 DR 265
            R
Sbjct: 227 GR 228