Miyakogusa Predicted Gene

Lj2g3v1989080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989080.1 tr|C1EF35|C1EF35_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_87955
,44.95,6e-19,rplS_bact: ribosomal protein L19,Ribosomal protein L19;
seg,NULL; Translation proteins SH3-like doma,CUFF.38298.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013300.2 | 50S ribosomal protein L19-2 | HC | chr5:419226...   254   3e-68
Medtr5g013300.1 | 50S ribosomal protein L19-2 | HC | chr5:419226...   254   3e-68
Medtr3g058620.1 | 50S ribosomal protein L19-2 | HC | chr3:233161...   112   2e-25

>Medtr5g013300.2 | 50S ribosomal protein L19-2 | HC |
           chr5:4192262-4195420 | 20130731
          Length = 229

 Score =  254 bits (650), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 165/234 (70%), Gaps = 13/234 (5%)

Query: 1   MASQVFLQQGLLLFAPNQCSPTKLG-VSSC----LGSRNFPLISSTSISWRCNNPLSAKP 55
           MASQV LQ    LF+P QC P+KL   SSC     GSRN PLIS TSIS RC+ PL AKP
Sbjct: 1   MASQVLLQA---LFSPIQCPPSKLCFTSSCTASTFGSRNLPLIS-TSISRRCS-PLIAKP 55

Query: 56  SFXXXXXXXXXXXXXXXG--EVPEAEGSVDQVPE-DGEAELASDSEVEQPKPPRKQRVKL 112
           SF                  E PEA  +VD+VPE +GE  L S SEVE+ KPPR+ RVKL
Sbjct: 56  SFVVRADSNSDAVSASDNVDENPEASDNVDEVPETEGEQILDSASEVEESKPPRQTRVKL 115

Query: 113 GDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXX 172
           GDVMGIL++RAI AS+ +R TP++RTGD+VEI+LEVPENKRRLSIYKGIVISRQN     
Sbjct: 116 GDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHT 175

Query: 173 XXXXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 226
                       VEIVFPIYSPNIKEIKVV HRKVR+ARLYYL+DKLPRFSTFK
Sbjct: 176 TIRVRRIIAGTGVEIVFPIYSPNIKEIKVVKHRKVRQARLYYLKDKLPRFSTFK 229


>Medtr5g013300.1 | 50S ribosomal protein L19-2 | HC |
           chr5:4192262-4195420 | 20130731
          Length = 229

 Score =  254 bits (650), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 165/234 (70%), Gaps = 13/234 (5%)

Query: 1   MASQVFLQQGLLLFAPNQCSPTKLG-VSSC----LGSRNFPLISSTSISWRCNNPLSAKP 55
           MASQV LQ    LF+P QC P+KL   SSC     GSRN PLIS TSIS RC+ PL AKP
Sbjct: 1   MASQVLLQA---LFSPIQCPPSKLCFTSSCTASTFGSRNLPLIS-TSISRRCS-PLIAKP 55

Query: 56  SFXXXXXXXXXXXXXXXG--EVPEAEGSVDQVPE-DGEAELASDSEVEQPKPPRKQRVKL 112
           SF                  E PEA  +VD+VPE +GE  L S SEVE+ KPPR+ RVKL
Sbjct: 56  SFVVRADSNSDAVSASDNVDENPEASDNVDEVPETEGEQILDSASEVEESKPPRQTRVKL 115

Query: 113 GDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXX 172
           GDVMGIL++RAI AS+ +R TP++RTGD+VEI+LEVPENKRRLSIYKGIVISRQN     
Sbjct: 116 GDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHT 175

Query: 173 XXXXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 226
                       VEIVFPIYSPNIKEIKVV HRKVR+ARLYYL+DKLPRFSTFK
Sbjct: 176 TIRVRRIIAGTGVEIVFPIYSPNIKEIKVVKHRKVRQARLYYLKDKLPRFSTFK 229


>Medtr3g058620.1 | 50S ribosomal protein L19-2 | HC |
           chr3:23316111-23311920 | 20130731
          Length = 219

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 90/138 (65%), Gaps = 5/138 (3%)

Query: 87  EDGEAELASDSEVEQPK-PPRKQRVKLG----DVMGILNQRAIEASESMRPTPEIRTGDV 141
           E    + + DS + +P+ PPR +  +L      +M IL++ A+E  +  R  P+I+ G +
Sbjct: 78  ETNSVDSSEDSSLPEPELPPRIKFKRLDKTARHIMQILDKEAVEEVKGQREVPDIKPGYI 137

Query: 142 VEIKLEVPENKRRLSIYKGIVISRQNXXXXXXXXXXXXXXXXXVEIVFPIYSPNIKEIKV 201
           V++K+EVPENKRR+SI KGIVI+R+N                 +E +FP+YSPNIKEIKV
Sbjct: 138 VQLKVEVPENKRRVSIIKGIVIARRNCGLHTTFRLRRMVAGVGIESLFPLYSPNIKEIKV 197

Query: 202 VNHRKVRRARLYYLRDKL 219
           ++ +KVRRA+LYYLRDK+
Sbjct: 198 LDKKKVRRAKLYYLRDKM 215