Miyakogusa Predicted Gene

Lj2g3v1988980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988980.1 tr|G7JYL5|G7JYL5_MEDTR DNA repair endonuclease
UVH1 OS=Medicago truncatula GN=MTR_5g013480 PE=4
SV=1,85.26,0,seg,NULL; ERCC4 domain,ERCC4 domain; no description,DNA
repair nuclease, XPF-type/Helicase; coiled-c,CUFF.38284.1
         (956 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013480.1 | DNA repair endonuclease UVH1-like protein | HC...  1496   0.0  

>Medtr5g013480.1 | DNA repair endonuclease UVH1-like protein | HC |
           chr5:4284600-4278305 | 20130731
          Length = 984

 Score = 1496 bits (3872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/984 (75%), Positives = 789/984 (80%), Gaps = 29/984 (2%)

Query: 1   MVQFQEHIITELLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           ++QF EHIITELLED                                             
Sbjct: 2   VLQFHEHIITELLEDTNGGLTILSSGLSLSKLISSLLLLHSSSQGTLLILSPSPTLKSKI 61

Query: 61  XNFHLKTLNPQFYQIPSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIA 120
            NFHLKTLNPQ +QIP+EITADLP +HRHSLY+SG+  FIT RILIVDLLTN+LPTS I+
Sbjct: 62  -NFHLKTLNPQLHQIPTEITADLPVNHRHSLYSSGHVCFITPRILIVDLLTNKLPTSTIS 120

Query: 121 GIVLLNAHSISETSTEAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRR 180
           G+++LNAHSISETSTEAFIVRIFRS NRDAYVRAFSD+P AMVSGFAKAERTMKCL LR+
Sbjct: 121 GMLILNAHSISETSTEAFIVRIFRSFNRDAYVRAFSDRPQAMVSGFAKAERTMKCLGLRK 180

Query: 181 LHLWPRFQVYVSQELERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIE 240
           LHLWPRFQVYVSQELERDPPDVVDIRVPMT+YMVGIQKAI+EVMDACLKEMRKTNKVD+E
Sbjct: 181 LHLWPRFQVYVSQELERDPPDVVDIRVPMTKYMVGIQKAIVEVMDACLKEMRKTNKVDVE 240

Query: 241 DLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL 300
           DLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL
Sbjct: 241 DLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYL 300

Query: 301 DTLRVSESFRSVWIFAEASYKIFDYAKKRVFHLVRSDGTXXXXXXXXXXXXXXXXXXXXX 360
           DTLRVSESFRSVWIFAEASYKIFDYAKKRV+HLVRSDG                      
Sbjct: 301 DTLRVSESFRSVWIFAEASYKIFDYAKKRVYHLVRSDGVKLNESSKNVKNKKKKAKGDNE 360

Query: 361 DTEEVDGTSSASSNAGXXXXXXXXXAPKWKXXXXXXXXXXXXXQKQGTLREEVLAEGEDT 420
           DTEE D T+S SSN G         APKWK             +KQG LREEVLAEGEDT
Sbjct: 361 DTEEADVTASTSSNHGIVLEEVLEEAPKWKVLRDILEEVEEERRKQGILREEVLAEGEDT 420

Query: 421 DNGIVLVACKDEMSCLQLEECITNSPKKVMREEWAKYLLNKVQLRDIVHXXXXXXXXXGF 480
           DNGIVLVACKDE SCLQLEECITN+PKKVM++EW KYLLNKVQLRD+VH         GF
Sbjct: 421 DNGIVLVACKDERSCLQLEECITNNPKKVMQDEWKKYLLNKVQLRDVVHKKKKPKDPKGF 480

Query: 481 GILDGVTPIAPAQKMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQPDFSGQVRSK 540
           GIL+GVTPI+ AQ  ET  INKQEHDALLAAAS+L+   E  HVVEDT Q D  G VR K
Sbjct: 481 GILNGVTPISLAQNTETGGINKQEHDALLAAASKLRNLAEKNHVVEDTPQSDLGGHVRGK 540

Query: 541 GKRKLGNRNSPIIVDGLGAQTDNKDASTSEKTGMS------------------------- 575
           GKRKLGNRN PII+DG G Q++NK+  TS KTGMS                         
Sbjct: 541 GKRKLGNRNGPIIIDGSGVQSNNKEEVTSGKTGMSDSKNKAHMGETSAVSTDRVCETKHG 600

Query: 576 ---VDNMVLRRHTNPDSASGSGKPLPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVRE 632
              VD+ VLRRHT PD+ +  GKPLPPVHFYALESDQP+LDILKPSII+VYHPDM FVRE
Sbjct: 601 GISVDDAVLRRHTFPDAMARDGKPLPPVHFYALESDQPILDILKPSIIVVYHPDMTFVRE 660

Query: 633 IEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPVDQGGHC 692
           IEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIP+DQ GH 
Sbjct: 661 IEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPIDQSGHG 720

Query: 693 LGLNSTLEADLNTPQNSITRKAGGRKEVDKDMQVIVDMREFMSSLPNVLHQKGMRIIPVT 752
           LG NSTL++DLNT QNSITRKAGGRKEVDK+MQ+IVDMREFMSSLPN+LHQKGMRIIPVT
Sbjct: 721 LGFNSTLDSDLNTTQNSITRKAGGRKEVDKEMQIIVDMREFMSSLPNILHQKGMRIIPVT 780

Query: 753 LEVGDYILSPLICVERKSIQDLFMSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQ 812
           LEVGDYILSPLICVERKSIQDLF SFTSGRLY+QVETM RYY+IPVLLIEFSQDKSFSFQ
Sbjct: 781 LEVGDYILSPLICVERKSIQDLFQSFTSGRLYNQVETMARYYKIPVLLIEFSQDKSFSFQ 840

Query: 813 SASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKAMR 872
           SASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHAT+EIFASLKANQDEPDETKAMR
Sbjct: 841 SASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATSEIFASLKANQDEPDETKAMR 900

Query: 873 VGVPSEEGIVEDDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCTSXXXXXXXXXXXXX 932
           VGVPSEEGIVE DVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGC S             
Sbjct: 901 VGVPSEEGIVESDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCKSLAELALLPVEKLA 960

Query: 933 XXMGGHKAARTLREFLDAKYPTLL 956
             MGGHKAARTLR+FLDAKYPTLL
Sbjct: 961 EIMGGHKAARTLRDFLDAKYPTLL 984