Miyakogusa Predicted Gene
- Lj2g3v1988750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1988750.1 Non Characterized Hit- tr|F6HTE1|F6HTE1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,60.93,0,zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type;
coiled-coil,NULL; seg,NULL; PROTEIN BINDING / ZIN,CUFF.38271.1
(314 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g013690.1 | SBP (S-ribonuclease-binding protein) family pr... 223 2e-58
Medtr4g099060.1 | SBP (S-ribonuclease-binding protein) family pr... 204 8e-53
Medtr4g099060.3 | SBP (S-ribonuclease-binding protein) family pr... 193 2e-49
Medtr4g099060.2 | SBP (S-ribonuclease-binding protein) family pr... 193 2e-49
Medtr5g013690.2 | SBP (S-ribonuclease-binding protein) family pr... 179 2e-45
Medtr4g083540.1 | SBP (S-ribonuclease-binding protein) family pr... 75 1e-13
Medtr2g069350.1 | SBP (S-ribonuclease-binding protein) family pr... 69 4e-12
Medtr3g117970.1 | zinc finger, C3HC4 type (RING finger) protein ... 67 2e-11
Medtr2g028830.1 | SBP (S-ribonuclease-binding protein) family pr... 67 3e-11
Medtr1g019250.1 | SBP (S-ribonuclease-binding protein) family pr... 62 7e-10
Medtr4g036485.1 | zinc finger, C3HC4 type (RING finger) protein ... 60 4e-09
>Medtr5g013690.1 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr5:4404637-4406926 | 20130731
Length = 335
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 174/345 (50%), Gaps = 42/345 (12%)
Query: 2 MAVHAQYPSNVLLLNSKKGQEGHDCSLQPQPGGFIEQSQ-MLFNNG--GTNPLKR--GRE 56
MAV AQYPSNVL LN+K GQE SLQPQP S MLFN G N KR GRE
Sbjct: 1 MAVQAQYPSNVLFLNNKNGQEHDQYSLQPQPPSNQSNSNIMLFNTAPTGANSRKRVRGRE 60
Query: 57 ATTTTNIGTGHKSSPYNINQSS------QFIDLTQLHNQPQQN-----VVSTGLHLSFGD 105
+ S Y +NQ S IDLTQL N Q +VSTGL LSFGD
Sbjct: 61 TGAM-------QQSQYMMNQFSLQSHTPHLIDLTQLQNHHHQQQQNQNIVSTGLGLSFGD 113
Query: 106 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKQQSDEINXXXXXXXXXXXXXXAEKRQ 165
IKQQ DEI+ EKRQ
Sbjct: 114 QQHQRLQLLQQQQCHSSHFLSLLSNGLASQ--IKQQKDEIDQFLQAQGEELQRTIEEKRQ 171
Query: 166 RHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXXXXXX 225
R+YR+++ AEE+V+ RL LEARAA L E+QLW
Sbjct: 172 RNYRAIIKTAEETVARRLREKEIDLQKATRRNAELEARAAHLRTEAQLWQAKAKEQEATA 231
Query: 226 XSLQAQLQRAIMSGG-------DGGLS---------EDAESAYVDPERVVEVGPTRECKG 269
SLQ QL A+MSGG + GLS EDAES Y+DPER V VG +C+G
Sbjct: 232 ISLQTQLHHAMMSGGAENRGENECGLSCALGVEGHAEDAESGYIDPERAV-VGSGPKCRG 290
Query: 270 CWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
C +RVASVVVLPCRHLCVCTECD +F CPVC T+KNS+V+VYLS
Sbjct: 291 CGERVASVVVLPCRHLCVCTECDTRFGVCPVCFTVKNSTVEVYLS 335
>Medtr4g099060.1 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr4:40985703-40983968 | 20130731
Length = 331
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 181/342 (52%), Gaps = 40/342 (11%)
Query: 2 MAVHAQYPSNVLLLNSKK---GQEGHDCSLQPQPGG-----FIEQSQ----MLFNNGGTN 49
MAV AQYPSN+LLL + GQEG QP G ++Q+ +L NN TN
Sbjct: 1 MAVQAQYPSNILLLLNNNNRNGQEGQ------QPSGALGLSLLDQTHHSHNILCNNTSTN 54
Query: 50 PLKRGREATTTTNIGTGHKSSPYNINQSSQFIDLTQLHNQPQQNVVSTGLHLSFGDXXXX 109
KR RE T+ I P Q SQ I L+QLHN QQNV STGL LSF D
Sbjct: 55 SRKRVREGTSPNVINHFSLQPP----QPSQIIHLSQLHNHQQQNV-STGLRLSFDDQQQQ 109
Query: 110 XXXXXXXXXXXXX-----XXXXXXXXXXXXXXXIKQQSDEINXXXXXXXXXXXXXXAEKR 164
IKQQ DE++ A+KR
Sbjct: 110 RLQLQLQLQLHQQQQGCHSSSFSSLLPQGLVSQIKQQHDELDQYLQTQGENLRRTLADKR 169
Query: 165 QRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXXXXX 224
Q+HYR LL AAEE+V+ RL LEAR AQL+ME+Q+W
Sbjct: 170 QKHYRELLNAAEEAVARRLREKEVEFAKATRRNAELEARTAQLTMEAQVWQAKARAQEAA 229
Query: 225 XXSLQAQLQRAIM--SGGD--GGLS-------EDAESAYVDPERVVEVGPTR-ECKGCWK 272
SLQAQLQ+ IM +G D GG+S EDAESAY+DP+RVVEV R +C+GC K
Sbjct: 230 AASLQAQLQQTIMCQTGEDAGGGVSCGVEGQAEDAESAYIDPDRVVEVAAARGKCRGCEK 289
Query: 273 RVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
RVA+VVVLPCRHLCVCTECDA FR CPVC T KNS+V+V+LS
Sbjct: 290 RVATVVVLPCRHLCVCTECDAHFRVCPVCFTPKNSTVEVFLS 331
>Medtr4g099060.3 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr4:40985703-40983968 | 20130731
Length = 286
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 153/286 (53%), Gaps = 22/286 (7%)
Query: 46 GGTNPLKRGREATTTTNIGTGHKSSPYNINQSSQFIDLTQLHNQPQQNVVSTGLHLSFGD 105
GTN KR RE T+ I P Q SQ I L+QLHN QQNV STGL LSF D
Sbjct: 6 AGTNSRKRVREGTSPNVINHFSLQPP----QPSQIIHLSQLHNHQQQNV-STGLRLSFDD 60
Query: 106 XXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXIKQQSDEINXXXXXXXXXXXXXX 160
IKQQ DE++
Sbjct: 61 QQQQRLQLQLQLQLHQQQQGCHSSSFSSLLPQGLVSQIKQQHDELDQYLQTQGENLRRTL 120
Query: 161 AEKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXX 220
A+KRQ+HYR LL AAEE+V+ RL LEAR AQL+ME+Q+W
Sbjct: 121 ADKRQKHYRELLNAAEEAVARRLREKEVEFAKATRRNAELEARTAQLTMEAQVWQAKARA 180
Query: 221 XXXXXXSLQAQLQRAIM--SGGD--GGLS-------EDAESAYVDPERVVEVGPTR-ECK 268
SLQAQLQ+ IM +G D GG+S EDAESAY+DP+RVVEV R +C+
Sbjct: 181 QEAAAASLQAQLQQTIMCQTGEDAGGGVSCGVEGQAEDAESAYIDPDRVVEVAAARGKCR 240
Query: 269 GCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
GC KRVA+VVVLPCRHLCVCTECDA FR CPVC T KNS+V+V+LS
Sbjct: 241 GCEKRVATVVVLPCRHLCVCTECDAHFRVCPVCFTPKNSTVEVFLS 286
>Medtr4g099060.2 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr4:40985703-40983968 | 20130731
Length = 286
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 153/286 (53%), Gaps = 22/286 (7%)
Query: 46 GGTNPLKRGREATTTTNIGTGHKSSPYNINQSSQFIDLTQLHNQPQQNVVSTGLHLSFGD 105
GTN KR RE T+ I P Q SQ I L+QLHN QQNV STGL LSF D
Sbjct: 6 AGTNSRKRVREGTSPNVINHFSLQPP----QPSQIIHLSQLHNHQQQNV-STGLRLSFDD 60
Query: 106 XXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXIKQQSDEINXXXXXXXXXXXXXX 160
IKQQ DE++
Sbjct: 61 QQQQRLQLQLQLQLHQQQQGCHSSSFSSLLPQGLVSQIKQQHDELDQYLQTQGENLRRTL 120
Query: 161 AEKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXX 220
A+KRQ+HYR LL AAEE+V+ RL LEAR AQL+ME+Q+W
Sbjct: 121 ADKRQKHYRELLNAAEEAVARRLREKEVEFAKATRRNAELEARTAQLTMEAQVWQAKARA 180
Query: 221 XXXXXXSLQAQLQRAIM--SGGD--GGLS-------EDAESAYVDPERVVEVGPTR-ECK 268
SLQAQLQ+ IM +G D GG+S EDAESAY+DP+RVVEV R +C+
Sbjct: 181 QEAAAASLQAQLQQTIMCQTGEDAGGGVSCGVEGQAEDAESAYIDPDRVVEVAAARGKCR 240
Query: 269 GCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
GC KRVA+VVVLPCRHLCVCTECDA FR CPVC T KNS+V+V+LS
Sbjct: 241 GCEKRVATVVVLPCRHLCVCTECDAHFRVCPVCFTPKNSTVEVFLS 286
>Medtr5g013690.2 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr5:4404637-4406926 | 20130731
Length = 272
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 137/272 (50%), Gaps = 30/272 (11%)
Query: 70 SPYNINQSS------QFIDLTQLHNQPQQN-----VVSTGLHLSFGDXXXXXXXXXXXXX 118
S Y +NQ S IDLTQL N Q +VSTGL LSFGD
Sbjct: 4 SQYMMNQFSLQSHTPHLIDLTQLQNHHHQQQQNQNIVSTGLGLSFGDQQHQRLQLLQQQQ 63
Query: 119 XXXXXXXXXXXXXXXXXXXIKQQSDEINXXXXXXXXXXXXXXAEKRQRHYRSLLIAAEES 178
IKQQ DEI+ EKRQR+YR+++ AEE+
Sbjct: 64 CHSSHFLSLLSNGLASQ--IKQQKDEIDQFLQAQGEELQRTIEEKRQRNYRAIIKTAEET 121
Query: 179 VSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXXXXXXXSLQAQLQRAIMS 238
V+ RL LEARAA L E+QLW SLQ QL A+MS
Sbjct: 122 VARRLREKEIDLQKATRRNAELEARAAHLRTEAQLWQAKAKEQEATAISLQTQLHHAMMS 181
Query: 239 GG-------DGGLS---------EDAESAYVDPERVVEVGPTRECKGCWKRVASVVVLPC 282
GG + GLS EDAES Y+DPER V VG +C+GC +RVASVVVLPC
Sbjct: 182 GGAENRGENECGLSCALGVEGHAEDAESGYIDPERAV-VGSGPKCRGCGERVASVVVLPC 240
Query: 283 RHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
RHLCVCTECD +F CPVC T+KNS+V+VYLS
Sbjct: 241 RHLCVCTECDTRFGVCPVCFTVKNSTVEVYLS 272
>Medtr4g083540.1 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr4:32583574-32582182 | 20130731
Length = 293
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 9/186 (4%)
Query: 138 IKQQSDEINXXXXXXXXXXXXXXAEKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXX 197
++ Q EI+ E+R + R L A +E+V+ +L
Sbjct: 108 LQNQQSEIDLFIAQHTERVRMEIEEQRLKQSRMLQAAIQEAVTKKLKQKEEEIQRMEKQN 167
Query: 198 XXLEARAAQLSMESQLWXXXXXXXXXXXXSLQAQLQRAIMSGGDGGLSEDAESA------ 251
L+ +A L ME+Q+W +L+ +L++ + + +DA S+
Sbjct: 168 LMLQEKAKTLIMENQIWREMALTNESAVNTLRNELEQVLAHVENHRNDDDAASSCGSNHH 227
Query: 252 -YVDPERVVEVGPT--RECKGCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSS 308
+ P + C GC +R + V++LPCRHLC+CT C R CP+C + N+S
Sbjct: 228 VKEEVVVEEASSPVVGKLCSGCGERESVVLLLPCRHLCLCTMCGTHIRNCPLCFSGINAS 287
Query: 309 VQVYLS 314
V V S
Sbjct: 288 VHVNFS 293
>Medtr2g069350.1 | SBP (S-ribonuclease-binding protein) family
protein, putative | HC | chr2:28829414-28827803 |
20130731
Length = 366
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 48/201 (23%)
Query: 162 EKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXX 221
EKR+R L+ A + SV+ R+ LE R L ME+Q+W
Sbjct: 166 EKRKRQAMRLIQAIDMSVTKRMKAKEEEIEKIGKMNWALEERVKSLCMENQIWRDLAQSN 225
Query: 222 XXXXXSLQAQLQRAI---MSGGDG-----------GLSEDAESA-----------YVDPE 256
+L+ L++ + GDG L +DAES VD
Sbjct: 226 EATANALRTNLEQLLQQRAPAGDGNEDTVVPARPVALMDDAESCCDSNESINDDDAVDQW 285
Query: 257 RVVE-----------------------VGPTRECKGCWKRVASVVVLPCRHLCVCTECDA 293
R V V + C C K + V++LPCRHLC+C C +
Sbjct: 286 RNVVGHNGKNIGAMKMVGNCGGGDSNFVNSMKLCSNCGKDESCVLILPCRHLCLCAVCGS 345
Query: 294 QFRACPVCLTLKNSSVQVYLS 314
CP+C + K +S+ V +S
Sbjct: 346 SLHICPICKSFKTASIHVNMS 366
>Medtr3g117970.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:55208474-55209165 | 20130731
Length = 196
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 69/174 (39%), Gaps = 10/174 (5%)
Query: 140 QQSDEINXXXXXXXXXXXXXXAEKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXX 199
QQSDE++ E+R R++L E V H L
Sbjct: 32 QQSDEVDRFLISQNEKLRLLLQEQR----RTILKKVEYDVFHILRQKDEQIAQATKKRME 87
Query: 200 LEARAAQLSMESQLWXXXXXXXXXXXXSLQAQLQRAIMSGGDGGLSEDAESAYVDPERVV 259
LE +L E+Q W SL L+ + + ED ES D E
Sbjct: 88 LEQFLTRLETENQSWRRAAHENEAMVLSLNNALES--IKEIRALVVEDVESC-CDQE--- 141
Query: 260 EVGPTRECKGCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYL 313
G CK C R++S + LPCRHLC C C+ +ACPVCL K S+++
Sbjct: 142 TTGLNMICKCCHSRMSSFMFLPCRHLCSCKACEPSLQACPVCLMPKRSTIETLF 195
>Medtr2g028830.1 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr2:10717401-10719729 | 20130731
Length = 319
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 162 EKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXX 221
E++ R R L +E+++ +L L+ + LS E+Q+W
Sbjct: 152 EQKLRQSRMLACMIQETIAKKLKEKDEEIQRIGKLNWMLQEKVKSLSAENQVWRELAQTN 211
Query: 222 XXXXXSLQAQLQRAIMSGGDGG-----LSEDAES-------AYVDPERVVEVGP---TRE 266
L+ L++ + +G +DAES A + VG R
Sbjct: 212 ETTANYLRNNLEQVMAHVNEGHHHAAVAEDDAESSCGSNAPADEGEDTAATVGGGGLVRM 271
Query: 267 CKGCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS 314
CK C R + V++LPCRHLC+C C + R CPVC + ++SV V LS
Sbjct: 272 CKNCGVRESVVLLLPCRHLCLCNVCGSTVRKCPVCDSGMDASVHVNLS 319
>Medtr1g019250.1 | SBP (S-ribonuclease-binding protein) family
protein | HC | chr1:5760299-5762861 | 20130731
Length = 340
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 176 EESVSHRLXXXXXXXXXXXXXXXXLEARAAQLSMESQLWXXXXXXXXXXXXSLQAQLQRA 235
E+ V +L LE + QLS+E+ W +L+ LQ+A
Sbjct: 189 EDKVLQKLREKETEVENINKRNMELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQA 248
Query: 236 IMSGGDG----GLSEDAESAYVDPERVVE----------VGPTRECKGCWKRVASVVVLP 281
+ G D G SE ++A R ++ + +CK C ++V+LP
Sbjct: 249 YLQGRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMKDLMKCKACRVNEVTMVLLP 308
Query: 282 CRHLCVCTECDAQFRACPVCLTLKNSSVQVYL 313
C+HLC+C +C+++ CP+C + K ++VY+
Sbjct: 309 CKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 340
>Medtr4g036485.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr4:13134134-13135654 | 20130731
Length = 212
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 70/179 (39%), Gaps = 9/179 (5%)
Query: 138 IKQQSDEINXXXXXXXXXXXXXXAEKRQRHYRSLLIAAEESVSHRLXXXXXXXXXXXXXX 197
+QQ DE+N E+R++ +LL E + H L
Sbjct: 35 FQQQMDEVNHFITSQSEKLRILVQEQRRQQVGTLLKKVESDMCHILRQKDEQIAQATKKR 94
Query: 198 XXLEARAAQLSMESQLWXXXXXXXXXXXXSLQAQLQRAIMSGGDGGLS-EDAESAYV--- 253
LE +L ++Q+W SL L++ + L+ E+ ES
Sbjct: 95 LELEQFLIRLETDNQMWRRASRENEAMVLSLNNALEQI----KERTLAIEEVESCCDMKN 150
Query: 254 -DPERVVEVGPTRECKGCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQV 311
+ E CK C+ + +S + LPCRHLC C C+ + CPVCL K S ++
Sbjct: 151 HEEETWENTSLNTICKCCYSQESSFMFLPCRHLCSCKSCEPSLQTCPVCLMPKRSIIET 209