Miyakogusa Predicted Gene

Lj2g3v1988570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988570.1 tr|A9TLF2|A9TLF2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147386,47.41,2e-18,FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.38268.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013800.1 | transmembrane protein, putative | HC | chr5:45...   238   1e-63
Medtr5g013800.2 | transmembrane protein, putative | HC | chr5:45...   238   2e-63
Medtr8g102160.1 | transmembrane protein, putative | HC | chr8:42...   104   3e-23
Medtr3g110460.1 | transmembrane protein, putative | HC | chr3:51...    92   2e-19
Medtr3g110460.2 | transmembrane protein, putative | HC | chr3:51...    92   2e-19

>Medtr5g013800.1 | transmembrane protein, putative | HC |
            chr5:4526714-4513931 | 20130731
          Length = 1437

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 124/152 (81%), Gaps = 1/152 (0%)

Query: 1    MLLADLSVTLLMLLQFYWXXXXXXXXXXXXXXXXXXXXXXXGLNALFSKEPRRASLSRVY 60
            MLLADLSVT+LMLLQFYW                       GLNALFSKEPRRAS SRVY
Sbjct: 1286 MLLADLSVTVLMLLQFYWISLAAFLSVLLILPLSLLFPFPAGLNALFSKEPRRASPSRVY 1345

Query: 61   ALWSATSLSNIGVAFICCLVHYAVSHLH-PDEASTRSVKREDDKCWLLPVILFLFKSVQV 119
            ALW+ATSLSNIGVAFICCL+HY +SH+H PDEASTR+VKREDDKCWLLP+ILFLFKSVQ 
Sbjct: 1346 ALWNATSLSNIGVAFICCLLHYTLSHMHYPDEASTRNVKREDDKCWLLPIILFLFKSVQA 1405

Query: 120  RLVNWHIANLEIQDFSLFCPDPDAFWAHESGL 151
            R VNWHIAN+EIQDFSLFCPDPDAFWAHESGL
Sbjct: 1406 RFVNWHIANMEIQDFSLFCPDPDAFWAHESGL 1437


>Medtr5g013800.2 | transmembrane protein, putative | HC |
            chr5:4524779-4513560 | 20130731
          Length = 1155

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 124/152 (81%), Gaps = 1/152 (0%)

Query: 1    MLLADLSVTLLMLLQFYWXXXXXXXXXXXXXXXXXXXXXXXGLNALFSKEPRRASLSRVY 60
            MLLADLSVT+LMLLQFYW                       GLNALFSKEPRRAS SRVY
Sbjct: 1004 MLLADLSVTVLMLLQFYWISLAAFLSVLLILPLSLLFPFPAGLNALFSKEPRRASPSRVY 1063

Query: 61   ALWSATSLSNIGVAFICCLVHYAVSHLH-PDEASTRSVKREDDKCWLLPVILFLFKSVQV 119
            ALW+ATSLSNIGVAFICCL+HY +SH+H PDEASTR+VKREDDKCWLLP+ILFLFKSVQ 
Sbjct: 1064 ALWNATSLSNIGVAFICCLLHYTLSHMHYPDEASTRNVKREDDKCWLLPIILFLFKSVQA 1123

Query: 120  RLVNWHIANLEIQDFSLFCPDPDAFWAHESGL 151
            R VNWHIAN+EIQDFSLFCPDPDAFWAHESGL
Sbjct: 1124 RFVNWHIANMEIQDFSLFCPDPDAFWAHESGL 1155


>Medtr8g102160.1 | transmembrane protein, putative | HC |
            chr8:42960250-42971543 | 20130731
          Length = 1402

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 83/147 (56%), Gaps = 2/147 (1%)

Query: 1    MLLADLSVTLLMLLQFYWXXXXXXXXXXXXXXXXXXXXXXXGLNALFSKEPRR-ASLSRV 59
            +LL D  + LL LLQ Y                        G++ALFS+ PRR A L+R+
Sbjct: 1254 LLLGDFILVLLTLLQMYSLSLVNFFLVLFILPLGVLFPFPSGISALFSQGPRRSAGLARL 1313

Query: 60   YALWSATSLSNIGVAFICCLVHYAV-SHLHPDEASTRSVKREDDKCWLLPVILFLFKSVQ 118
            YALW+ TSL N+ VAFIC  +HY V SH       + S   ++ + W+LP  LFL K +Q
Sbjct: 1314 YALWNMTSLVNVVVAFICGFIHYTVHSHDKHPNVQSWSFSMDESEWWMLPSGLFLCKIIQ 1373

Query: 119  VRLVNWHIANLEIQDFSLFCPDPDAFW 145
             RL+++H+AN EIQD SL+  D + FW
Sbjct: 1374 ARLIDFHVANQEIQDPSLYSSDTNVFW 1400


>Medtr3g110460.1 | transmembrane protein, putative | HC |
            chr3:51645866-51631348 | 20130731
          Length = 1447

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 15/113 (13%)

Query: 42   GLNALFSKEPRR-ASLSRVYALWSATSLSNIGVAFICCLVHY----AVSHLHPDEASTRS 96
            G+NALFS  PRR A L+R+YALW+ TS  N+ VAF+C  +HY    + S  HP      S
Sbjct: 1339 GINALFSHGPRRSAGLARLYALWNLTSFINVAVAFLCGYIHYNSQSSSSKRHP------S 1392

Query: 97   VK----REDDKCWLLPVILFLFKSVQVRLVNWHIANLEIQDFSLFCPDPDAFW 145
            ++     ++++ W+ P  L L K +Q +L+NWH+ANLEIQD SL+  D + FW
Sbjct: 1393 IQPWNIMDENEWWIFPAGLVLCKILQSQLINWHVANLEIQDRSLYSNDFELFW 1445


>Medtr3g110460.2 | transmembrane protein, putative | HC |
            chr3:51645866-51631348 | 20130731
          Length = 1447

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 15/113 (13%)

Query: 42   GLNALFSKEPRR-ASLSRVYALWSATSLSNIGVAFICCLVHY----AVSHLHPDEASTRS 96
            G+NALFS  PRR A L+R+YALW+ TS  N+ VAF+C  +HY    + S  HP      S
Sbjct: 1339 GINALFSHGPRRSAGLARLYALWNLTSFINVAVAFLCGYIHYNSQSSSSKRHP------S 1392

Query: 97   VK----REDDKCWLLPVILFLFKSVQVRLVNWHIANLEIQDFSLFCPDPDAFW 145
            ++     ++++ W+ P  L L K +Q +L+NWH+ANLEIQD SL+  D + FW
Sbjct: 1393 IQPWNIMDENEWWIFPAGLVLCKILQSQLINWHVANLEIQDRSLYSNDFELFW 1445