Miyakogusa Predicted Gene

Lj2g3v1984950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984950.1 Non Characterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,93.18,0,no
description,RNA polymerase Rpb7, N-terminal; no description,Nucleic
acid-binding, OB-fold; DNA-DI,CUFF.38217.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | ...   343   6e-95
Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | ...   343   6e-95
Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | ...   343   6e-95
Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | ...   343   6e-95
Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-li...    78   4e-15
Medtr8g072680.3 | DNA-directed RNA polymerase III protein | HC |...    54   5e-08
Medtr8g072680.1 | DNA-directed RNA polymerase III protein | HC |...    54   5e-08
Medtr8g072680.2 | DNA-directed RNA polymerase III protein | HC |...    54   7e-08

>Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520748-38524543 | 20130731
          Length = 176

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/176 (93%), Positives = 172/176 (97%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIE+IGKG+I 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTG VTFPVKY+CVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTI 176
           +GDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/176 (93%), Positives = 172/176 (97%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIE+IGKG+I 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTG VTFPVKY+CVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTI 176
           +GDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/176 (93%), Positives = 172/176 (97%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIE+IGKG+I 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTG VTFPVKY+CVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTI 176
           +GDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/176 (93%), Positives = 172/176 (97%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIE+IGKG+I 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTG VTFPVKY+CVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTI 176
           +GDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:33201883-33201326 | 20130731
          Length = 185

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 6/156 (3%)

Query: 22  LRDNLVAKLMKDVEGTCSGR-HGFVVAVTGIEDIGKGLILDGTGSVTFPVKYRCVVFRPF 80
           L+  ++ +L+ D     + +  G+ +AVT ++ IG+G +   TG V FPV +  V F+ F
Sbjct: 30  LQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIF 89

Query: 81  KGEVLEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDASVKIQKD 139
           KGEVLE VV  V K G F   GP++  ++S+  +P  + +  G+ P Y  +    KI KD
Sbjct: 90  KGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPGYV-YVLGENP-YFMNQKMPKIAKD 147

Query: 140 SEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
            +VR+ +IGT+ ++A   F  +  ++ D+LG I+ P
Sbjct: 148 VKVRVVVIGTKWMEAEREFQALVGLEGDYLGPISSP 183


>Medtr8g072680.3 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735986-30740276 | 20130731
          Length = 192

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I  I  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G+ T+ V +  ++FRPF GE++ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115

Query: 115 DDMEFQSGD-----MPNYTTSDASVKIQKDSEVRLKIIG 148
               + S +        Y        I+  +E+R +++ 
Sbjct: 116 YPSYYISKNNTRKWTWEYGEETDEFNIEISNEIRFQVLS 154


>Medtr8g072680.1 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735666-30740276 | 20130731
          Length = 192

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I  I  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G+ T+ V +  ++FRPF GE++ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115

Query: 115 DDMEFQSGD-----MPNYTTSDASVKIQKDSEVRLKIIG 148
               + S +        Y        I+  +E+R +++ 
Sbjct: 116 YPSYYISKNNTRKWTWEYGEETDEFNIEISNEIRFQVLS 154


>Medtr8g072680.2 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735776-30740237 | 20130731
          Length = 160

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I  I  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G+ T+ V +  ++FRPF GE++ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115