Miyakogusa Predicted Gene

Lj2g3v1984720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984720.1 Non Characterized Hit- tr|O49683|O49683_ARATH
Putative uncharacterized protein AT4g17840
OS=Arabidop,57.28,3e-18,seg,NULL; coiled-coil,NULL,CUFF.38235.1
         (104 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g014430.1 | CAAX protease self-immunity protein | HC | chr...    81   2e-16

>Medtr5g014430.1 | CAAX protease self-immunity protein | HC |
           chr5:4857082-4853330 | 20130731
          Length = 371

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 49/103 (47%), Gaps = 33/103 (32%)

Query: 1   MKKIYSPXXXXXXXXXXGFEWIQVILFNFTSFLNVVYLRLQMMKLISVLFGMLVWQTNNI 60
           MKKIYSP          GFEWIQ                                 TNNI
Sbjct: 301 MKKIYSPLLEGLLALYLGFEWIQ---------------------------------TNNI 327

Query: 61  LAPIITHGIYSTVILGHGLWKINDHXXXXXXXXXXXKSEEQNS 103
           L+PIITHGIYSTVILGHGLWKI+DH           KSEE+NS
Sbjct: 328 LSPIITHGIYSTVILGHGLWKIHDHRRRLRQRIQQLKSEEKNS 370