Miyakogusa Predicted Gene
- Lj2g3v1984320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1984320.1 tr|G7K140|G7K140_MEDTR Malate dehydrogenase
OS=Medicago truncatula GN=MTR_5g014710 PE=3
SV=1,89.39,0,Ldh_1_C,Lactate/malate dehydrogenase, C-terminal;
Ldh_1_N,Lactate/malate dehydrogenase, N-terminal; ,CUFF.38199.1
(355 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g014710.1 | glyoxysomal malate dehydrogenase | HC | chr5:4... 624 e-179
Medtr4g092690.1 | glyoxysomal malate dehydrogenase | HC | chr4:3... 577 e-165
Medtr8g463760.1 | malate dehydrogenase | HC | chr8:22494348-2249... 395 e-110
Medtr8g463760.2 | malate dehydrogenase | HC | chr8:22494347-2249... 259 3e-69
Medtr2g045010.1 | malate dehydrogenase | HC | chr2:19586812-1958... 81 2e-15
Medtr2g021700.1 | malate dehydrogenase | HC | chr2:7390300-73922... 81 2e-15
Medtr4g033285.1 | malate dehydrogenase | LC | chr4:11658666-1165... 72 9e-13
Medtr5g012390.1 | L-lactate dehydrogenase A-like protein | HC | ... 61 1e-09
Medtr4g101130.1 | L-lactate dehydrogenase A-like protein | HC | ... 57 2e-08
>Medtr5g014710.1 | glyoxysomal malate dehydrogenase | HC |
chr5:4992016-4987668 | 20130731
Length = 358
Score = 624 bits (1608), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/358 (86%), Positives = 324/358 (90%), Gaps = 3/358 (0%)
Query: 1 MEPNSDANQRIAMIAAHLNPPNLMMED---ASLRTAHCRAKGGAPGFKVAILGAAGGIGQ 57
MEPNS AN RI IA+HLNPPNL M + +SL HCRAKGG+PGFKVAILGAAGGIGQ
Sbjct: 1 MEPNSYANSRITRIASHLNPPNLKMNEHGGSSLTNVHCRAKGGSPGFKVAILGAAGGIGQ 60
Query: 58 PLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQKQLEDALIGMDLVII 117
PL+MLMK+NPLVSVLHLYDVVNTPGVTSDISHMDT AVVRGFLGQ QLEDAL GMDLVII
Sbjct: 61 PLSMLMKINPLVSVLHLYDVVNTPGVTSDISHMDTSAVVRGFLGQNQLEDALTGMDLVII 120
Query: 118 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKRA 177
PAGVPRKPGMTRDDLFNINAGIVKTLCE IAK CPKAIVNLISNPVNSTVPIAAEVFKRA
Sbjct: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKQCPKAIVNLISNPVNSTVPIAAEVFKRA 180
Query: 178 GTYDPKRLLGVTMLDVVRANTFVAEVLGIXXXXXXXXXXGGHAGVTILPLLSQVKPPCSF 237
GTYDPKRLLGVTMLDVVRANTFVAEV+G+ GGHAG+TILPLLSQVKPP SF
Sbjct: 181 GTYDPKRLLGVTMLDVVRANTFVAEVMGLDPRDVDVPVVGGHAGITILPLLSQVKPPSSF 240
Query: 238 TPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYV 297
TPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAA KFADA LRAL+G+A I++CAYV
Sbjct: 241 TPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRALKGEADIVQCAYV 300
Query: 298 DSQVTELPFFASKVRLGRGGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 355
DSQVTELPFFASKVRLGR GVEE LPLGPL+DYER SLEKAKKELATSVEKGVSFIRK
Sbjct: 301 DSQVTELPFFASKVRLGRNGVEEFLPLGPLSDYERASLEKAKKELATSVEKGVSFIRK 358
>Medtr4g092690.1 | glyoxysomal malate dehydrogenase | HC |
chr4:36762718-36765660 | 20130731
Length = 356
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/356 (79%), Positives = 314/356 (88%), Gaps = 1/356 (0%)
Query: 1 MEPNSDANQRIAMIAAHLNPPNLMME-DASLRTAHCRAKGGAPGFKVAILGAAGGIGQPL 59
ME ++ ANQRIA I+AHL+P N D + A+CRAKGGAPGFKVA+LGAAGGIGQ L
Sbjct: 1 MEAHAGANQRIARISAHLHPSNFQEGGDVVIDRANCRAKGGAPGFKVAVLGAAGGIGQSL 60
Query: 60 AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQKQLEDALIGMDLVIIPA 119
++L+KMNPLVSVLHLYDVVNTPGVT+D+SHMDTGAVVRGFLGQ QLE+AL GMDLV+IPA
Sbjct: 61 SLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPA 120
Query: 120 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKRAGT 179
GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFK+AGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 180 YDPKRLLGVTMLDVVRANTFVAEVLGIXXXXXXXXXXGGHAGVTILPLLSQVKPPCSFTP 239
YDPKRLLGVT LDVVRANTFVAEVLG+ GGHAGVTILPLLSQVKPP SFT
Sbjct: 181 YDPKRLLGVTALDVVRANTFVAEVLGVDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTA 240
Query: 240 KEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADASLRALRGDAGIIECAYVDS 299
+E EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAAKFA++ L L+G+AG+IECAYVDS
Sbjct: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVIECAYVDS 300
Query: 300 QVTELPFFASKVRLGRGGVEEILPLGPLNDYERESLEKAKKELATSVEKGVSFIRK 355
QVTELPFFA+KVRLGR G EEI PLGPLN+YER LEKAK+ELA S++KGV FI+K
Sbjct: 301 QVTELPFFATKVRLGRAGAEEIFPLGPLNEYERIGLEKAKRELAGSIQKGVEFIKK 356
>Medtr8g463760.1 | malate dehydrogenase | HC |
chr8:22494348-22490385 | 20130731
Length = 343
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 236/312 (75%), Gaps = 1/312 (0%)
Query: 42 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLG 101
P KVAILGAAGGIGQPL++LMK+NPLVS L LYD+ TPGV +D+SH+++ + V G+ G
Sbjct: 29 PERKVAILGAAGGIGQPLSLLMKLNPLVSTLSLYDIAGTPGVAADVSHINSRSQVTGYAG 88
Query: 102 QKQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 161
+ +L AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L I+K CP A+VN+ISN
Sbjct: 89 EDELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLATAISKYCPHALVNMISN 148
Query: 162 PVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVLGIXXXXXXXXXXGGHAG 221
PVNSTVPIAAEVFK+AGTYD KRL GVT LDVVRA TF A + GGHAG
Sbjct: 149 PVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 208
Query: 222 VTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAS 281
VTILPL SQ P + I+ LT R Q+GGTEVV AKAG GSATLSMAYA A FADA
Sbjct: 209 VTILPLFSQASPQANLDDDVIKALTARTQDGGTEVVTAKAGKGSATLSMAYAGAIFADAC 268
Query: 282 LRALRGDAGIIECAYVDSQ-VTELPFFASKVRLGRGGVEEILPLGPLNDYERESLEKAKK 340
L+ L G ++EC+YV S + ELPFFASKVR+G+ GVEEIL LG L+D+E++ LE K
Sbjct: 269 LKGLNGVPDVVECSYVQSNLIAELPFFASKVRIGKNGVEEILGLGSLSDFEKQGLENLKS 328
Query: 341 ELATSVEKGVSF 352
EL +S+EKG+ F
Sbjct: 329 ELKSSIEKGIKF 340
>Medtr8g463760.2 | malate dehydrogenase | HC |
chr8:22494347-22490385 | 20130731
Length = 251
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/197 (67%), Positives = 152/197 (77%), Gaps = 1/197 (0%)
Query: 42 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLG 101
P KVAILGAAGGIGQPL++LMK+NPLVS L LYD+ TPGV +D+SH+++ + V G+ G
Sbjct: 29 PERKVAILGAAGGIGQPLSLLMKLNPLVSTLSLYDIAGTPGVAADVSHINSRSQVTGYAG 88
Query: 102 QKQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 161
+ +L AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+L I+K CP A+VN+ISN
Sbjct: 89 EDELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLATAISKYCPHALVNMISN 148
Query: 162 PVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVLGIXXXXXXXXXXGGHAG 221
PVNSTVPIAAEVFK+AGTYD KRL GVT LDVVRA TF A + GGHAG
Sbjct: 149 PVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 208
Query: 222 VTILPLLSQVKPPCSFT 238
VTILPL SQV CS T
Sbjct: 209 VTILPLFSQVI-TCSLT 224
>Medtr2g045010.1 | malate dehydrogenase | HC |
chr2:19586812-19584816 | 20130731
Length = 150
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 45/60 (75%)
Query: 201 AEVLGIXXXXXXXXXXGGHAGVTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGTEVVEAK 260
AEVLG+ GGHAGVTILPLLSQ K P SFT +E EYLT+RIQNGGTEVVE++
Sbjct: 43 AEVLGVDPREVDVPVVGGHAGVTILPLLSQAKSPSSFTAEETEYLTNRIQNGGTEVVESQ 102
>Medtr2g021700.1 | malate dehydrogenase | HC | chr2:7390300-7392293
| 20130731
Length = 150
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 45/60 (75%)
Query: 201 AEVLGIXXXXXXXXXXGGHAGVTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGTEVVEAK 260
AEVLG+ GGHAGVTILPLLSQ K P SFT +E EYLT+RIQNGGTEVVE++
Sbjct: 43 AEVLGVDPREVDVPVVGGHAGVTILPLLSQAKSPSSFTAEETEYLTNRIQNGGTEVVESQ 102
>Medtr4g033285.1 | malate dehydrogenase | LC |
chr4:11658666-11657042 | 20130731
Length = 96
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 39/54 (72%)
Query: 201 AEVLGIXXXXXXXXXXGGHAGVTILPLLSQVKPPCSFTPKEIEYLTDRIQNGGT 254
AEVLG+ GGHAGVTILPLLSQ K P SFT +E EYLT+RIQNGGT
Sbjct: 43 AEVLGVDPREVDVPVVGGHAGVTILPLLSQDKSPSSFTAEETEYLTNRIQNGGT 96
>Medtr5g012390.1 | L-lactate dehydrogenase A-like protein | HC |
chr5:3706531-3705145 | 20130731
Length = 350
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 41/323 (12%)
Query: 45 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV--NTPGVTSDISHMDTGAVVRGFLGQ 102
K++++GA G +G +A + LV L L D + G D+ H FL +
Sbjct: 39 KISVIGA-GNVGMAIAQTILTQDLVDELVLVDAIPDKLRGEMLDLQH------AAAFLPR 91
Query: 103 KQLE-----DALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 157
+++ +G DL I+ AG + G +R +L N + K + + + P ++
Sbjct: 92 TKIQASTDYSVTMGSDLCIVTAGARQINGESRLNLLQRNVALFKKIIPPLVRYSPHCVLL 151
Query: 158 LISNPVNSTVPIAAEVFKRAGTYDPKRLLGV-TMLDVVRANTFVAEVLGIXXXXXXXXXX 216
++SNPV+ IA +K +G + R++G T LD R +A+ L +
Sbjct: 152 IVSNPVDVLTYIA---WKLSG-FPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207
Query: 217 GGHAGVTI----------LPLLSQV-KPPCSFTPKEIEYLTDRIQNGGTEVVEAKAGAGS 265
G H ++ +P+LS + K ++ + +E + + NG EV+ K G
Sbjct: 208 GEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKEMLENIHKEVINGAYEVISLK---GY 264
Query: 266 ATLSMAYAAAKFADASLRALR--GDAGIIECAYVDSQVTELPFFASKVRLGRGGVEEILP 323
+ ++ Y+ A A +R R ++ + E+ F + +LGRGGV
Sbjct: 265 TSWAIGYSVANLARTIMRNQRKIHPVSVLAKGFYGIDGGEV-FISLPAQLGRGGV----- 318
Query: 324 LGPLNDYERESLEKAKKELATSV 346
LG N + E K ++ A ++
Sbjct: 319 LGVTNIHMTEEEMKRLRDSAITI 341
>Medtr4g101130.1 | L-lactate dehydrogenase A-like protein | HC |
chr4:41764793-41767250 | 20130731
Length = 350
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 142/328 (43%), Gaps = 38/328 (11%)
Query: 45 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTP----GVTSDISHMDTGAVVRGFL 100
K++++GA G +G +A + L L + D N P G D+ H FL
Sbjct: 39 KISVIGA-GNVGMAIAQTILTQDLTDELVIVD--NKPDKLRGEMLDLQH------AAAFL 89
Query: 101 GQKQLEDAL-----IGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 155
+ ++ ++ G DL I+ AG + G +R +L N + K + +A+ P+ +
Sbjct: 90 PRVKINSSVEYSVTAGSDLCIVTAGARQIGGESRLNLLQRNLSLFKAIIPPLARYSPETV 149
Query: 156 VNLISNPVNSTVPIAAEVFKRAGTYDPKRLLGV-TMLDVVRANTFVAEVLGIXXXXXXXX 214
+ ++SNPV+ IA +K +G + R++G T LD R +A+ L +
Sbjct: 150 LIIVSNPVDVLTYIA---WKLSG-FPSNRVIGSGTNLDSSRFCFLIADHLQVNAQDVQAC 205
Query: 215 XXGGHAGVTI----------LPLLSQV-KPPCSFTPKEIEYLTDRIQNGGTEVVEAKAGA 263
G H ++ +P+LS + K ++ + +E + + N EV+ K
Sbjct: 206 IVGEHGDSSVALWSSISIGGIPVLSFLEKQQIAYEKETLENIHKTVINSAYEVISLK--- 262
Query: 264 GSATLSMAYAAAKFADASLRALRGDAGIIECAYVDSQVTELPFFAS-KVRLGRGGVEEIL 322
G + ++ Y+ A A + +R R + A + ++ F S +LGRGGV +
Sbjct: 263 GYTSWAIGYSVASLARSIIRDQRKIHPVSVLAKGFYGIGDVEVFLSLPAQLGRGGVLGVT 322
Query: 323 PLGPLNDYERESLEKAKKELATSVEKGV 350
+ + E+ + AK L + G+
Sbjct: 323 NVHMNKEEEQRLRDSAKTILEVQTQLGI 350