Miyakogusa Predicted Gene

Lj2g3v1984100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984100.1 Non Characterized Hit- tr|A9NZ33|A9NZ33_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,52.08,2e-18,seg,NULL; ESSS,NADH:ubiquinone oxidoreductase, ESSS
subunit,CUFF.38189.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g059290.1 | complex I subunit | HC | chr1:21522614-2152361...   134   3e-32

>Medtr1g059290.1 | complex I subunit | HC | chr1:21522614-21523612 |
           20130731
          Length = 112

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 66/69 (95%)

Query: 36  GHEEHPKGYLFNRTPLAPWESRSWEDWELPCYITSFLTIVILGVGLNAKPDLTMETWAHE 95
           GHEE PKGYLFN+TPLAP ESR WEDWELPCYITSFLTIVILGVGLNAKPDLT+ETWAH+
Sbjct: 27  GHEERPKGYLFNQTPLAPGESRKWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHD 86

Query: 96  KALERLRME 104
           KALERLR+E
Sbjct: 87  KALERLRLE 95